Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d04
         (844 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    23   4.0  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   7.0  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   7.0  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   7.0  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.2  

>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 478 HVSAPRQQHVAQLLPLLAPERAVHRVGHADRALRLVH-AGAH 600
           ++SAP ++H+A ++ L   +  +    H  +  R  H  G H
Sbjct: 64  YLSAPEREHLASIIRLTPTQVKIWFQNHRYKTKRAQHEKGMH 105


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/14 (71%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = +2

Query: 77  LSFYY-YPFGLHYY 115
           LS YY YPFGL  Y
Sbjct: 274 LSMYYQYPFGLPEY 287


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 74  GLSFYYYPFGLHYYFKTPSPSSNY 145
           G+SFY++     Y+F T +  + Y
Sbjct: 236 GVSFYFFISTFFYFFTTGNIIATY 259


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 74  GLSFYYYPFGLHYYFKTPSPSSNY 145
           G+SFY++     Y+F T +  + Y
Sbjct: 232 GVSFYFFISTFFYFFTTGNIIATY 255


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 392 NFVYYTYCNCFGLVILLCYNISQNLSVIFT 303
           +F+  TY   +  +ILLC        +IFT
Sbjct: 95  HFLLCTYYFYYAFIILLCVYYFYYAFIIFT 124


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,192
Number of Sequences: 336
Number of extensions: 3414
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23244256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)