Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d04
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    68   1e-12
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    28   1.9  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   4.4  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   7.7  

>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 31/114 (27%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
 Frame = -2

Query: 789 NHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPD--LTFDEIISELQIEEKDVEAFVIEV 616
           NH    H Q  + +   +KM++L+   +A   P+  L++ ++   L+I+E +VE ++I+V
Sbjct: 265 NHAHCQH-QKFDEDAIARKMKLLTIASLATQAPNNTLSYGDVAKSLKIDENEVELWIIDV 323

Query: 615 LKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANVHQAHEAMK 454
           ++  LV  RM Q  +T+ +  + +R FG+ +W  L + L  W +++    + M+
Sbjct: 324 IRAGLVEGRMSQLTKTLSIHRSSYRVFGKHEWVALHEKLAKWGSSLRYMLQVME 377


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 20/106 (18%), Positives = 43/106 (40%)
 Frame = -2

Query: 765 QGLNHEQNIKKMRILSFMQMAETNPDLTFDEIISELQIEEKDVEAFVIEVLKTRLVRARM 586
           +GL ++  + K  ++  +      P+    ++       E +       +  T L + R 
Sbjct: 66  RGLENKGKLSKTSLVEALARVRAKPETVLYKVADP---NENNKYPICSIISYTELSKLRE 122

Query: 585 DQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANVHQAHEAMKSV 448
           +Q+ R      + H+   R ++     VL +WR +V+     +KSV
Sbjct: 123 NQSSRLREAEKSKHKNKTRTRY-----VLFSWRTDVNDIERKLKSV 163


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = -2

Query: 828 VSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPDLTFDEIISELQIE 649
           + EKL+S Q+ YNN  E ++        N K+  ++S   + E      +D ++SELQ+ 
Sbjct: 305 LQEKLTSQQSLYNNVTEELN--------NNKQQLLISENSLRELQE--KYDSVVSELQVV 354

Query: 648 EKD 640
           +++
Sbjct: 355 KEN 357


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -2

Query: 759 LNHEQNIKKMRILSFMQMAETNPDLTFDEIISELQIEEKDVEAFVIEVLKTRL 601
           LN  Q +KK     F+ + E N  L  D+I SEL+IE K     +  + K++L
Sbjct: 324 LNQTQ-VKKEDNKKFL-LKEINAKLNEDDIDSELEIEVKPKTTALDNIEKSKL 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,574
Number of Sequences: 5004
Number of extensions: 56813
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)