Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d04
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0012 - 210670-210759,210939-211008,211138-211235,211318-21...    85   9e-17
01_05_0085 - 17995800-17995985,17996724-17996823,17996919-179971...    49   5e-06
03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596...    46   4e-05
03_01_0011 - 99475-99701,99846-99954,100051-100218,100867-101142       29   6.1  

>04_01_0012 -
           210670-210759,210939-211008,211138-211235,211318-211427,
           211533-211683,212247-212391,212483-212749,212819-212957,
           213036-213270
          Length = 434

 Score = 84.6 bits (200), Expect = 9e-17
 Identities = 40/126 (31%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
 Frame = -2

Query: 843 LLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNP-DLTFDEII 667
           LL IF++++L SY  F + +   +   GL HE  I KMR++S + ++     ++ +  II
Sbjct: 286 LLKIFLTQRLDSYLEFQSANSALLKGYGLVHEDCITKMRLMSLLDLSSRCAGEIPYHAII 345

Query: 666 SELQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWR 487
             L+I + +VE ++++ +  +++  ++DQ  + + VS    R FG  QWQ LR  L  WR
Sbjct: 346 DALKINDDEVEYWIVKAISCKILDCKVDQLNQVIIVSRHTERIFGMPQWQSLRSKLGVWR 405

Query: 486 ANVHQA 469
            N+  A
Sbjct: 406 GNIASA 411


>01_05_0085 -
           17995800-17995985,17996724-17996823,17996919-17997115,
           17997836-17997916,17998046-17998492,17998774-17998920
          Length = 385

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
 Frame = -2

Query: 843 LLTIFVSEKLSSYQTFYNNHKEFVHSQGL---NHEQNIKKMRILSFMQMAETNP--DLTF 679
           +L  F +  L+ YQ     H   + +Q     N  + ++K+ IL  M++  T P  D T 
Sbjct: 240 MLQAFNTGNLALYQELCKVHNAALSAQPALVQNERKLLEKINILCLMEIIFTRPSEDRTI 299

Query: 678 D-EIISE-LQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRD 505
              +I+E  ++   DVE  +++ L   L+   +D+   TV VS    R  G  Q + LR+
Sbjct: 300 PLSVIAERTKLSISDVEYLLMKSLSVHLIEGIIDEVDSTVHVSWVQPRVLGIPQVKALRE 359

Query: 504 VLLAWRANVH 475
            L AW   VH
Sbjct: 360 RLDAWVGKVH 369


>03_02_0154 +
           5967512-5967658,5968206-5968652,5968766-5968846,
           5969058-5969075,5969552-5969748,5969844-5969943,
           5970676-5970861
          Length = 391

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
 Frame = -2

Query: 843 LLTIFVSEKLSSYQTFYNNHKEFVHSQGL---NHEQNIKKMRILSFMQM--AETNPDLTF 679
           +L  F +  L+ YQ     H   + +Q     N  + ++K+ IL  M++  +  + D T 
Sbjct: 246 MLQAFNTGNLALYQELCRVHNAALSAQPALVQNERKLLEKINILCLMEIIFSRASEDRTI 305

Query: 678 D-EIISE-LQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRD 505
              +I+E  ++   DVE  +++ L   L+   +D+   TV VS    R  G  Q + LR+
Sbjct: 306 PLSVIAERTKLSISDVEYLLMKSLSVHLIEGIIDEVDSTVHVSWVQPRVLGIPQVKALRE 365

Query: 504 VLLAWRANVH 475
            L AW   VH
Sbjct: 366 RLDAWVGKVH 375


>03_01_0011 - 99475-99701,99846-99954,100051-100218,100867-101142
          Length = 259

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 95  PFGLHYYFKTPSPS 136
           P G+HYY+ TP+PS
Sbjct: 241 PTGIHYYYTTPAPS 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,590,838
Number of Sequences: 37544
Number of extensions: 305020
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)