Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d04
(844 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK222564-1|BAD96284.1| 374|Homo sapiens dendritic cell protein ... 152 1e-36
CR450300-1|CAG29296.1| 374|Homo sapiens GA17 protein. 151 2e-36
BC051292-1|AAH51292.1| 374|Homo sapiens eukaryotic translation ... 151 2e-36
BC019103-1|AAH19103.1| 374|Homo sapiens PCI domain containing 1... 151 2e-36
AY769947-1|AAX12524.1| 374|Homo sapiens fetal lung protein B5 p... 151 2e-36
AF277183-1|AAK07542.1| 206|Homo sapiens PNAS-125 protein. 151 2e-36
AF064603-1|AAC17108.1| 374|Homo sapiens GA17 protein protein. 149 9e-36
BT007307-1|AAP35971.1| 376|Homo sapiens proteasome (prosome, ma... 51 5e-06
BC001747-1|AAH01747.1| 376|Homo sapiens proteasome (prosome, ma... 51 5e-06
BC001100-1|AAH01100.1| 376|Homo sapiens proteasome (prosome, ma... 51 5e-06
AK222895-1|BAD96615.1| 376|Homo sapiens proteasome 26S non-ATPa... 51 5e-06
AF107837-1|AAD43442.1| 376|Homo sapiens 26S proteasome subunit ... 51 5e-06
AF086708-1|AAC64104.1| 376|Homo sapiens 26S proteasome subunit ... 51 5e-06
AB009398-1|BAA33214.1| 376|Homo sapiens 26S proteasome subunit ... 51 5e-06
AF107836-1|AAD43441.1| 160|Homo sapiens 26S proteasome subunit ... 44 7e-04
AF399517-1|AAK95002.1| 216|Homo sapiens olfactory receptor prot... 32 3.0
AB065835-1|BAC06054.1| 319|Homo sapiens seven transmembrane hel... 32 3.0
BC091493-1|AAH91493.1| 273|Homo sapiens COPS7B protein protein. 31 4.0
AL450999-1|CAH70622.1| 314|Homo sapiens olfactory receptor, fam... 31 4.0
AK222879-1|BAD96599.1| 264|Homo sapiens COP9 constitutive photo... 31 4.0
AK022674-1|BAB14170.1| 264|Homo sapiens protein ( Homo sapiens ... 31 4.0
AC073476-4|AAY24152.1| 264|Homo sapiens unknown protein. 31 4.0
AB065625-1|BAC05851.1| 314|Homo sapiens seven transmembrane hel... 31 4.0
AF137396-2|AAG41676.1| 318|Homo sapiens HOR 5'Beta14 protein. 31 5.2
BC093015-1|AAH93015.1| 248|Homo sapiens COPS7A protein protein. 30 9.1
BC011789-1|AAH11789.1| 275|Homo sapiens COPS7A protein protein. 30 9.1
AK022488-1|BAB14052.1| 275|Homo sapiens protein ( Homo sapiens ... 30 9.1
AK001318-1|BAA91620.1| 275|Homo sapiens protein ( Homo sapiens ... 30 9.1
AF210052-1|AAF19205.1| 275|Homo sapiens COP9 complex subunit 7a... 30 9.1
AF193844-1|AAF04307.1| 275|Homo sapiens COP9 complex subunit 7a... 30 9.1
AB033603-1|BAA85390.1| 275|Homo sapiens cop9 complex subunit 7a... 30 9.1
AB014764-1|BAB87805.1| 275|Homo sapiens DERP10 (dermal papilla ... 30 9.1
>AK222564-1|BAD96284.1| 374|Homo sapiens dendritic cell protein
variant protein.
Length = 374
Score = 152 bits (369), Expect = 1e-36
Identities = 70/132 (53%), Positives = 99/132 (75%)
Frame = -2
Query: 843 LLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPDLTFDEIIS 664
LLTIFVS KL+SY FY N+K+F+ S GL HEQN+ KMR+L+FM MA N +++FD +
Sbjct: 240 LLTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTVQQ 299
Query: 663 ELQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRA 484
ELQI DVEAFVI+ ++T++V ++DQ QR V VS++ HRTFG++QWQQL D L AW+
Sbjct: 300 ELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQ 359
Query: 483 NVHQAHEAMKSV 448
N+++ ++ S+
Sbjct: 360 NLNKVKNSLLSL 371
>CR450300-1|CAG29296.1| 374|Homo sapiens GA17 protein.
Length = 374
Score = 151 bits (367), Expect = 2e-36
Identities = 70/132 (53%), Positives = 99/132 (75%)
Frame = -2
Query: 843 LLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPDLTFDEIIS 664
LLTIFVS KL+SY FY N+K+F+ S GL HEQN+ KMR+L+FM MA N +++FD +
Sbjct: 240 LLTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQ 299
Query: 663 ELQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRA 484
ELQI DVEAFVI+ ++T++V ++DQ QR V VS++ HRTFG++QWQQL D L AW+
Sbjct: 300 ELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQ 359
Query: 483 NVHQAHEAMKSV 448
N+++ ++ S+
Sbjct: 360 NLNKVKNSLLSL 371
>BC051292-1|AAH51292.1| 374|Homo sapiens eukaryotic translation
initiation factor 3, subunit M protein.
Length = 374
Score = 151 bits (367), Expect = 2e-36
Identities = 70/132 (53%), Positives = 99/132 (75%)
Frame = -2
Query: 843 LLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPDLTFDEIIS 664
LLTIFVS KL+SY FY N+K+F+ S GL HEQN+ KMR+L+FM MA N +++FD +
Sbjct: 240 LLTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQ 299
Query: 663 ELQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRA 484
ELQI DVEAFVI+ ++T++V ++DQ QR V VS++ HRTFG++QWQQL D L AW+
Sbjct: 300 ELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQ 359
Query: 483 NVHQAHEAMKSV 448
N+++ ++ S+
Sbjct: 360 NLNKVKNSLLSL 371
>BC019103-1|AAH19103.1| 374|Homo sapiens PCI domain containing 1
(herpesvirus entry mediator) protein.
Length = 374
Score = 151 bits (367), Expect = 2e-36
Identities = 70/132 (53%), Positives = 99/132 (75%)
Frame = -2
Query: 843 LLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPDLTFDEIIS 664
LLTIFVS KL+SY FY N+K+F+ S GL HEQN+ KMR+L+FM MA N +++FD +
Sbjct: 240 LLTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQ 299
Query: 663 ELQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRA 484
ELQI DVEAFVI+ ++T++V ++DQ QR V VS++ HRTFG++QWQQL D L AW+
Sbjct: 300 ELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQ 359
Query: 483 NVHQAHEAMKSV 448
N+++ ++ S+
Sbjct: 360 NLNKVKNSLLSL 371
>AY769947-1|AAX12524.1| 374|Homo sapiens fetal lung protein B5
protein.
Length = 374
Score = 151 bits (367), Expect = 2e-36
Identities = 70/132 (53%), Positives = 99/132 (75%)
Frame = -2
Query: 843 LLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPDLTFDEIIS 664
LLTIFVS KL+SY FY N+K+F+ S GL HEQN+ KMR+L+FM MA N +++FD +
Sbjct: 240 LLTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQ 299
Query: 663 ELQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRA 484
ELQI DVEAFVI+ ++T++V ++DQ QR V VS++ HRTFG++QWQQL D L AW+
Sbjct: 300 ELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQ 359
Query: 483 NVHQAHEAMKSV 448
N+++ ++ S+
Sbjct: 360 NLNKVKNSLLSL 371
>AF277183-1|AAK07542.1| 206|Homo sapiens PNAS-125 protein.
Length = 206
Score = 151 bits (367), Expect = 2e-36
Identities = 70/132 (53%), Positives = 99/132 (75%)
Frame = -2
Query: 843 LLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPDLTFDEIIS 664
LLTIFVS KL+SY FY N+K+F+ S GL HEQN+ KMR+L+FM MA N +++FD +
Sbjct: 56 LLTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDTMQQ 115
Query: 663 ELQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRA 484
ELQI DVEAFVI+ ++T++V ++DQ QR V VS++ HRTFG++QWQQL D L AW+
Sbjct: 116 ELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQLYDTLNAWKQ 175
Query: 483 NVHQAHEAMKSV 448
N+++ ++ S+
Sbjct: 176 NLNKVKNSLLSL 187
>AF064603-1|AAC17108.1| 374|Homo sapiens GA17 protein protein.
Length = 374
Score = 149 bits (362), Expect = 9e-36
Identities = 69/132 (52%), Positives = 99/132 (75%)
Frame = -2
Query: 843 LLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPDLTFDEIIS 664
LLTIFVS KL+SY FY N+K+F+ S GL HEQN+ KMR+L+FM MA N +++FD +
Sbjct: 240 LLTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAIENKEISFDTMQQ 299
Query: 663 ELQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRA 484
ELQI DVEAFVI+ ++T++V ++DQ QR V VS++ HRTFG+++WQQL D L AW+
Sbjct: 300 ELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQRWQQLYDTLNAWKQ 359
Query: 483 NVHQAHEAMKSV 448
N+++ ++ S+
Sbjct: 360 NLNKVKNSLLSL 371
>BT007307-1|AAP35971.1| 376|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 13 protein.
Length = 376
Score = 51.2 bits (117), Expect = 5e-06
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Frame = -2
Query: 756 NHEQNIKKMRILSFMQMAETNP----DLTFDEIISELQIEEKDVEAFVIEVLKTRLVRAR 589
N Q ++K+++L M+M T P LTF+EI +I +VE V++ L LV+
Sbjct: 264 NEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGS 323
Query: 588 MDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANV--------HQAHEAM 457
+D+ + V ++ R +Q + ++D L W +V HQAH+ +
Sbjct: 324 IDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
>BC001747-1|AAH01747.1| 376|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 13 protein.
Length = 376
Score = 51.2 bits (117), Expect = 5e-06
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Frame = -2
Query: 756 NHEQNIKKMRILSFMQMAETNP----DLTFDEIISELQIEEKDVEAFVIEVLKTRLVRAR 589
N Q ++K+++L M+M T P LTF+EI +I +VE V++ L LV+
Sbjct: 264 NEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGS 323
Query: 588 MDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANV--------HQAHEAM 457
+D+ + V ++ R +Q + ++D L W +V HQAH+ +
Sbjct: 324 IDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
>BC001100-1|AAH01100.1| 376|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 13 protein.
Length = 376
Score = 51.2 bits (117), Expect = 5e-06
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Frame = -2
Query: 756 NHEQNIKKMRILSFMQMAETNP----DLTFDEIISELQIEEKDVEAFVIEVLKTRLVRAR 589
N Q ++K+++L M+M T P LTF+EI +I +VE V++ L LV+
Sbjct: 264 NEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGS 323
Query: 588 MDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANV--------HQAHEAM 457
+D+ + V ++ R +Q + ++D L W +V HQAH+ +
Sbjct: 324 IDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
>AK222895-1|BAD96615.1| 376|Homo sapiens proteasome 26S non-ATPase
subunit 13 isoform 1 variant protein.
Length = 376
Score = 51.2 bits (117), Expect = 5e-06
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Frame = -2
Query: 756 NHEQNIKKMRILSFMQMAETNP----DLTFDEIISELQIEEKDVEAFVIEVLKTRLVRAR 589
N Q ++K+++L M+M T P LTF+EI +I +VE V++ L LV+
Sbjct: 264 NEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGS 323
Query: 588 MDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANV--------HQAHEAM 457
+D+ + V ++ R +Q + ++D L W +V HQAH+ +
Sbjct: 324 IDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
>AF107837-1|AAD43442.1| 376|Homo sapiens 26S proteasome subunit
p40.5 protein.
Length = 376
Score = 51.2 bits (117), Expect = 5e-06
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Frame = -2
Query: 756 NHEQNIKKMRILSFMQMAETNP----DLTFDEIISELQIEEKDVEAFVIEVLKTRLVRAR 589
N Q ++K+++L M+M T P LTF+EI +I +VE V++ L LV+
Sbjct: 264 NEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGS 323
Query: 588 MDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANV--------HQAHEAM 457
+D+ + V ++ R +Q + ++D L W +V HQAH+ +
Sbjct: 324 IDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
>AF086708-1|AAC64104.1| 376|Homo sapiens 26S proteasome subunit 11
protein.
Length = 376
Score = 51.2 bits (117), Expect = 5e-06
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Frame = -2
Query: 756 NHEQNIKKMRILSFMQMAETNP----DLTFDEIISELQIEEKDVEAFVIEVLKTRLVRAR 589
N Q ++K+++L M+M T P LTF+EI +I +VE V++ L LV+
Sbjct: 264 NEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGS 323
Query: 588 MDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANV--------HQAHEAM 457
+D+ + V ++ R +Q + ++D L W +V HQAH+ +
Sbjct: 324 IDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
>AB009398-1|BAA33214.1| 376|Homo sapiens 26S proteasome subunit
p40.5 protein.
Length = 376
Score = 51.2 bits (117), Expect = 5e-06
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Frame = -2
Query: 756 NHEQNIKKMRILSFMQMAETNP----DLTFDEIISELQIEEKDVEAFVIEVLKTRLVRAR 589
N Q ++K+++L M+M T P LTF+EI +I +VE V++ L LV+
Sbjct: 264 NEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGS 323
Query: 588 MDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANV--------HQAHEAM 457
+D+ + V ++ R +Q + ++D L W +V HQAH+ +
Sbjct: 324 IDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
>AF107836-1|AAD43441.1| 160|Homo sapiens 26S proteasome subunit
p40.5 protein.
Length = 160
Score = 44.0 bits (99), Expect = 7e-04
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = -2
Query: 756 NHEQNIKKMRILSFMQMAETNP----DLTFDEIISELQIEEKDVEAFVIEVLKTRLVRAR 589
N Q ++K+++L M+M T P LTF+EI +I +VE V++ L LV+
Sbjct: 78 NEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGS 137
Query: 588 MDQAQRTVRVSNTMHRTFGREQ 523
+D+ + V ++ R +Q
Sbjct: 138 IDEVDKRVHMTWVQPRVLDLQQ 159
>AF399517-1|AAK95002.1| 216|Homo sapiens olfactory receptor
protein.
Length = 216
Score = 31.9 bits (69), Expect = 3.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 401 CSHNFVYYTYCNCFGLVILLCYNISQNLSVIFTTSG 294
C N + Y YC+C L+ +LC + ++ +I SG
Sbjct: 102 CGSNIISYFYCDCIPLMSILCSDTNELELIILIFSG 137
>AB065835-1|BAC06054.1| 319|Homo sapiens seven transmembrane helix
receptor protein.
Length = 319
Score = 31.9 bits (69), Expect = 3.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 401 CSHNFVYYTYCNCFGLVILLCYNISQNLSVIFTTSG 294
C N + Y YC+C L+ +LC + ++ +I SG
Sbjct: 175 CGSNIISYFYCDCIPLMSILCSDTNELELIILIFSG 210
>BC091493-1|AAH91493.1| 273|Homo sapiens COPS7B protein protein.
Length = 273
Score = 31.5 bits (68), Expect = 4.0
Identities = 14/83 (16%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = -2
Query: 735 KMRILSFMQMAETNPDLTFDEIISELQIEE-KDVEAFVIEVLKTRLVRARMDQAQRTVRV 559
K++ L+ + +A + + ++ +L++ +++E +IE + T +++ ++DQ + + V
Sbjct: 95 KLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEV 154
Query: 558 SNTMHRTFGREQWQQLRDVLLAW 490
+ R ++ + L W
Sbjct: 155 DFCIGRDIRKKDINNIVKTLHEW 177
>AL450999-1|CAH70622.1| 314|Homo sapiens olfactory receptor, family
1, subfamily C, memberfamily, member 3 protein.
Length = 314
Score = 31.5 bits (68), Expect = 4.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 401 CSHNFVYYTYCNCFGLVILLCYNISQNLSVIFTTSG 294
C+ N +++ +C+ L+ L C ++S N+ +IF G
Sbjct: 169 CASNIIHHFFCDLNPLLQLSCSDVSFNVMIIFAVGG 204
>AK222879-1|BAD96599.1| 264|Homo sapiens COP9 constitutive
photomorphogenic homolog subunit 7B variant protein.
Length = 264
Score = 31.5 bits (68), Expect = 4.0
Identities = 14/83 (16%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = -2
Query: 735 KMRILSFMQMAETNPDLTFDEIISELQIEE-KDVEAFVIEVLKTRLVRARMDQAQRTVRV 559
K++ L+ + +A + + ++ +L++ +++E +IE + T +++ ++DQ + + V
Sbjct: 95 KLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEV 154
Query: 558 SNTMHRTFGREQWQQLRDVLLAW 490
+ R ++ + L W
Sbjct: 155 DFCIGRDIRKKDINNIVKTLHEW 177
>AK022674-1|BAB14170.1| 264|Homo sapiens protein ( Homo sapiens
cDNA FLJ12612 fis, clone NT2RM4001582, highly similar to
Mus musculus COP9 complex subunit 7b (COPS7b) mRNA. ).
Length = 264
Score = 31.5 bits (68), Expect = 4.0
Identities = 14/83 (16%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = -2
Query: 735 KMRILSFMQMAETNPDLTFDEIISELQIEE-KDVEAFVIEVLKTRLVRARMDQAQRTVRV 559
K++ L+ + +A + + ++ +L++ +++E +IE + T +++ ++DQ + + V
Sbjct: 95 KLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEV 154
Query: 558 SNTMHRTFGREQWQQLRDVLLAW 490
+ R ++ + L W
Sbjct: 155 DFCIGRDIRKKDINNIVKTLHEW 177
>AC073476-4|AAY24152.1| 264|Homo sapiens unknown protein.
Length = 264
Score = 31.5 bits (68), Expect = 4.0
Identities = 14/83 (16%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = -2
Query: 735 KMRILSFMQMAETNPDLTFDEIISELQIEE-KDVEAFVIEVLKTRLVRARMDQAQRTVRV 559
K++ L+ + +A + + ++ +L++ +++E +IE + T +++ ++DQ + + V
Sbjct: 95 KLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEV 154
Query: 558 SNTMHRTFGREQWQQLRDVLLAW 490
+ R ++ + L W
Sbjct: 155 DFCIGRDIRKKDINNIVKTLHEW 177
>AB065625-1|BAC05851.1| 314|Homo sapiens seven transmembrane helix
receptor protein.
Length = 314
Score = 31.5 bits (68), Expect = 4.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 401 CSHNFVYYTYCNCFGLVILLCYNISQNLSVIFTTSG 294
C+ N +++ +C+ L+ L C ++S N+ +IF G
Sbjct: 169 CASNIIHHFFCDLNPLLQLSCSDVSFNVMIIFAVGG 204
>AF137396-2|AAG41676.1| 318|Homo sapiens HOR 5'Beta14 protein.
Length = 318
Score = 31.1 bits (67), Expect = 5.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 401 CSHNFVYYTYCNCFGLVILLCYNISQNL 318
C H + +TYC G+ L C NI+ N+
Sbjct: 172 CGHRVMTHTYCEHMGIARLACANITVNI 199
>BC093015-1|AAH93015.1| 248|Homo sapiens COPS7A protein protein.
Length = 248
Score = 30.3 bits (65), Expect = 9.1
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -2
Query: 750 EQNIKKMRILSFMQMAETNPDLTFDEIISELQIEE-KDVEAFVIEVLKTRLVRARMDQAQ 574
E K+R LS + +A + + ++ L + + +E VIE + ++R +DQ
Sbjct: 90 EAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGSLDQRN 149
Query: 573 RTVRVSNTMHRTFGREQWQQLRDVLLAW 490
+ + V ++ R R+ + L W
Sbjct: 150 QRLEVDYSIGRDIQRQDLSAIARTLQEW 177
>BC011789-1|AAH11789.1| 275|Homo sapiens COPS7A protein protein.
Length = 275
Score = 30.3 bits (65), Expect = 9.1
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -2
Query: 750 EQNIKKMRILSFMQMAETNPDLTFDEIISELQIEE-KDVEAFVIEVLKTRLVRARMDQAQ 574
E K+R LS + +A + + ++ L + + +E VIE + ++R +DQ
Sbjct: 90 EAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGSLDQRN 149
Query: 573 RTVRVSNTMHRTFGREQWQQLRDVLLAW 490
+ + V ++ R R+ + L W
Sbjct: 150 QRLEVDYSIGRDIQRQDLSAIARTLQEW 177
>AK022488-1|BAB14052.1| 275|Homo sapiens protein ( Homo sapiens
cDNA FLJ12426 fis, clone MAMMA1003113, highly similar to
Mus musculus COP9 complex subunit 7a (COPS7a) mRNA. ).
Length = 275
Score = 30.3 bits (65), Expect = 9.1
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -2
Query: 750 EQNIKKMRILSFMQMAETNPDLTFDEIISELQIEE-KDVEAFVIEVLKTRLVRARMDQAQ 574
E K+R LS + +A + + ++ L + + +E VIE + ++R +DQ
Sbjct: 90 EAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGSLDQRN 149
Query: 573 RTVRVSNTMHRTFGREQWQQLRDVLLAW 490
+ + V ++ R R+ + L W
Sbjct: 150 QRLEVDYSIGRDIQRQDLSAIARTLQEW 177
>AK001318-1|BAA91620.1| 275|Homo sapiens protein ( Homo sapiens
cDNA FLJ10456 fis, clone NT2RP1001395. ).
Length = 275
Score = 30.3 bits (65), Expect = 9.1
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -2
Query: 750 EQNIKKMRILSFMQMAETNPDLTFDEIISELQIEE-KDVEAFVIEVLKTRLVRARMDQAQ 574
E K+R LS + +A + + ++ L + + +E VIE + ++R +DQ
Sbjct: 90 EAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGSLDQRN 149
Query: 573 RTVRVSNTMHRTFGREQWQQLRDVLLAW 490
+ + V ++ R R+ + L W
Sbjct: 150 QRLEVDYSIGRDIQRQDLSAIARTLQEW 177
>AF210052-1|AAF19205.1| 275|Homo sapiens COP9 complex subunit 7a
protein.
Length = 275
Score = 30.3 bits (65), Expect = 9.1
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -2
Query: 750 EQNIKKMRILSFMQMAETNPDLTFDEIISELQIEE-KDVEAFVIEVLKTRLVRARMDQAQ 574
E K+R LS + +A + + ++ L + + +E VIE + ++R +DQ
Sbjct: 90 EAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGSLDQRN 149
Query: 573 RTVRVSNTMHRTFGREQWQQLRDVLLAW 490
+ + V ++ R R+ + L W
Sbjct: 150 QRLEVDYSIGRDIQRQDLSAIARTLQEW 177
>AF193844-1|AAF04307.1| 275|Homo sapiens COP9 complex subunit 7a
protein.
Length = 275
Score = 30.3 bits (65), Expect = 9.1
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -2
Query: 750 EQNIKKMRILSFMQMAETNPDLTFDEIISELQIEE-KDVEAFVIEVLKTRLVRARMDQAQ 574
E K+R LS + +A + + ++ L + + +E VIE + ++R +DQ
Sbjct: 90 EAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGSLDQRN 149
Query: 573 RTVRVSNTMHRTFGREQWQQLRDVLLAW 490
+ + V ++ R R+ + L W
Sbjct: 150 QRLEVDYSIGRDIQRQDLSAIARTLQEW 177
>AB033603-1|BAA85390.1| 275|Homo sapiens cop9 complex subunit 7a
protein.
Length = 275
Score = 30.3 bits (65), Expect = 9.1
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -2
Query: 750 EQNIKKMRILSFMQMAETNPDLTFDEIISELQIEE-KDVEAFVIEVLKTRLVRARMDQAQ 574
E K+R LS + +A + + ++ L + + +E VIE + ++R +DQ
Sbjct: 90 EAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGSLDQRN 149
Query: 573 RTVRVSNTMHRTFGREQWQQLRDVLLAW 490
+ + V ++ R R+ + L W
Sbjct: 150 QRLEVDYSIGRDIQRQDLSAIARTLQEW 177
>AB014764-1|BAB87805.1| 275|Homo sapiens DERP10 (dermal papilla
derived protein 10) protein.
Length = 275
Score = 30.3 bits (65), Expect = 9.1
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -2
Query: 750 EQNIKKMRILSFMQMAETNPDLTFDEIISELQIEE-KDVEAFVIEVLKTRLVRARMDQAQ 574
E K+R LS + +A + + ++ L + + +E VIE + ++R +DQ
Sbjct: 90 EAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGSLDQRN 149
Query: 573 RTVRVSNTMHRTFGREQWQQLRDVLLAW 490
+ + V ++ R R+ + L W
Sbjct: 150 QRLEVDYSIGRDIQRQDLSAIARTLQEW 177
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,860,234
Number of Sequences: 237096
Number of extensions: 1698817
Number of successful extensions: 7231
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 7122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7231
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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