Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d04
(844 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118924-1|AAM50784.1| 387|Drosophila melanogaster LD23767p pro... 185 6e-47
AE013599-1830|AAF58289.1| 387|Drosophila melanogaster CG8309-PA... 185 6e-47
AY061232-1|AAL28780.1| 382|Drosophila melanogaster LD17530p pro... 40 0.006
AF145311-1|AAF08392.1| 382|Drosophila melanogaster 26S proteaso... 40 0.006
AE014297-3373|AAF56174.1| 382|Drosophila melanogaster CG10230-P... 40 0.006
AE014297-3372|AAF56173.1| 382|Drosophila melanogaster CG10230-P... 40 0.006
AF067207-1|AAD10630.1| 1023|Drosophila melanogaster CLOCK protein. 33 0.65
AF065133-1|AAC39101.1| 1015|Drosophila melanogaster CLOCK protein. 33 0.65
BT024259-1|ABC86321.1| 119|Drosophila melanogaster IP15827p pro... 32 1.1
AY061575-1|AAL29123.1| 428|Drosophila melanogaster SD02746p pro... 30 3.5
AF317419-1|AAK69597.1| 432|Drosophila melanogaster lysosomal-as... 30 3.5
AE013599-705|AAF59049.3| 432|Drosophila melanogaster CG14767-PC... 30 3.5
AE013599-704|AAF59050.2| 432|Drosophila melanogaster CG14767-PB... 30 3.5
AE013599-703|AAM68833.2| 428|Drosophila melanogaster CG14767-PA... 30 3.5
>AY118924-1|AAM50784.1| 387|Drosophila melanogaster LD23767p
protein.
Length = 387
Score = 185 bits (451), Expect = 6e-47
Identities = 83/132 (62%), Positives = 109/132 (82%)
Frame = -2
Query: 843 LLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPDLTFDEIIS 664
LL+IFVSEKL +Y FY +H+EFV+SQGLNHEQN+KKMR+L+FMQ+AE++P++TF+ +
Sbjct: 241 LLSIFVSEKLPAYVQFYEDHREFVNSQGLNHEQNMKKMRLLTFMQLAESSPEMTFETLTK 300
Query: 663 ELQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRA 484
ELQI E +VE FVIEVLKT+LVRAR+DQA + V +S+TMHRTFG QW+QLRD+L AW+
Sbjct: 301 ELQINEDEVEPFVIEVLKTKLVRARLDQANQKVHISSTMHRTFGAPQWEQLRDLLQAWKE 360
Query: 483 NVHQAHEAMKSV 448
N+ E + SV
Sbjct: 361 NLSTVREGLTSV 372
>AE013599-1830|AAF58289.1| 387|Drosophila melanogaster CG8309-PA
protein.
Length = 387
Score = 185 bits (451), Expect = 6e-47
Identities = 83/132 (62%), Positives = 109/132 (82%)
Frame = -2
Query: 843 LLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPDLTFDEIIS 664
LL+IFVSEKL +Y FY +H+EFV+SQGLNHEQN+KKMR+L+FMQ+AE++P++TF+ +
Sbjct: 241 LLSIFVSEKLPAYVQFYEDHREFVNSQGLNHEQNMKKMRLLTFMQLAESSPEMTFETLTK 300
Query: 663 ELQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRA 484
ELQI E +VE FVIEVLKT+LVRAR+DQA + V +S+TMHRTFG QW+QLRD+L AW+
Sbjct: 301 ELQINEDEVEPFVIEVLKTKLVRARLDQANQKVHISSTMHRTFGAPQWEQLRDLLQAWKE 360
Query: 483 NVHQAHEAMKSV 448
N+ E + SV
Sbjct: 361 NLSTVREGLTSV 372
>AY061232-1|AAL28780.1| 382|Drosophila melanogaster LD17530p
protein.
Length = 382
Score = 39.5 bits (88), Expect = 0.006
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = -2
Query: 738 KKMRILSFMQM----AETNPDLTFDEIISELQIEEKDVEAFVIEVLKTRLVRARMDQAQR 571
+K+ +L M+M + ++F +I E ++ K+VE +++ L LVR +DQ
Sbjct: 275 QKISLLCLMEMTFKRSAIERAISFTDIAQETKLPAKEVELLIMKALALDLVRGEIDQVAG 334
Query: 570 TVRVSNTMHRTFGREQWQQLRDVLLAWRANVHQAHEAMKS 451
V +S R R Q + L W + + M++
Sbjct: 335 VVNMSWVQPRVLNRSQIVGMASTLDTWMGAITNMEKLMEN 374
>AF145311-1|AAF08392.1| 382|Drosophila melanogaster 26S proteasome
regulatory complexsubunit p39A protein.
Length = 382
Score = 39.5 bits (88), Expect = 0.006
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = -2
Query: 738 KKMRILSFMQM----AETNPDLTFDEIISELQIEEKDVEAFVIEVLKTRLVRARMDQAQR 571
+K+ +L M+M + ++F +I E ++ K+VE +++ L LVR +DQ
Sbjct: 275 QKISLLCLMEMTFKRSAIERAISFTDIAQETKLPAKEVELLIMKALALDLVRGEIDQVAG 334
Query: 570 TVRVSNTMHRTFGREQWQQLRDVLLAWRANVHQAHEAMKS 451
V +S R R Q + L W + + M++
Sbjct: 335 VVNMSWVQPRVLNRSQIVGMASTLDTWMGAITNMEKLMEN 374
>AE014297-3373|AAF56174.1| 382|Drosophila melanogaster CG10230-PB,
isoform B protein.
Length = 382
Score = 39.5 bits (88), Expect = 0.006
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = -2
Query: 738 KKMRILSFMQM----AETNPDLTFDEIISELQIEEKDVEAFVIEVLKTRLVRARMDQAQR 571
+K+ +L M+M + ++F +I E ++ K+VE +++ L LVR +DQ
Sbjct: 275 QKISLLCLMEMTFKRSAIERAISFTDIAQETKLPAKEVELLIMKALALDLVRGEIDQVAG 334
Query: 570 TVRVSNTMHRTFGREQWQQLRDVLLAWRANVHQAHEAMKS 451
V +S R R Q + L W + + M++
Sbjct: 335 VVNMSWVQPRVLNRSQIVGMASTLDTWMGAITNMEKLMEN 374
>AE014297-3372|AAF56173.1| 382|Drosophila melanogaster CG10230-PA,
isoform A protein.
Length = 382
Score = 39.5 bits (88), Expect = 0.006
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = -2
Query: 738 KKMRILSFMQM----AETNPDLTFDEIISELQIEEKDVEAFVIEVLKTRLVRARMDQAQR 571
+K+ +L M+M + ++F +I E ++ K+VE +++ L LVR +DQ
Sbjct: 275 QKISLLCLMEMTFKRSAIERAISFTDIAQETKLPAKEVELLIMKALALDLVRGEIDQVAG 334
Query: 570 TVRVSNTMHRTFGREQWQQLRDVLLAWRANVHQAHEAMKS 451
V +S R R Q + L W + + M++
Sbjct: 335 VVNMSWVQPRVLNRSQIVGMASTLDTWMGAITNMEKLMEN 374
>AF067207-1|AAD10630.1| 1023|Drosophila melanogaster CLOCK protein.
Length = 1023
Score = 32.7 bits (71), Expect = 0.65
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = -2
Query: 792 NNHKEFVHSQGLNHEQNIKKMRILSFMQMA-ETNPDLTFDEIISELQIEEKDVEAFVIEV 616
NN + +++ N QN + +LS+MQMA E++P + F IS+ E + + ++
Sbjct: 887 NNGNQNNNNRSSNPPQNNNEDSLLSYMQMATESSPSINFHMGISDDGSETQSEDNKMMHT 946
Query: 615 LKTRLVRARMDQAQR 571
+ LV+ + Q Q+
Sbjct: 947 SGSNLVQQQQQQQQQ 961
>AF065133-1|AAC39101.1| 1015|Drosophila melanogaster CLOCK protein.
Length = 1015
Score = 32.7 bits (71), Expect = 0.65
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = -2
Query: 792 NNHKEFVHSQGLNHEQNIKKMRILSFMQMA-ETNPDLTFDEIISELQIEEKDVEAFVIEV 616
NN + +++ N QN + +LS+MQMA E++P + F IS+ E + + ++
Sbjct: 879 NNGNQNNNNRSSNPPQNNNEDSLLSYMQMATESSPSINFHMGISDDGSETQSEDNKMMHT 938
Query: 615 LKTRLVRARMDQAQR 571
+ LV+ + Q Q+
Sbjct: 939 SGSNLVQQQQQQQQQ 953
>BT024259-1|ABC86321.1| 119|Drosophila melanogaster IP15827p
protein.
Length = 119
Score = 31.9 bits (69), Expect = 1.1
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = -2
Query: 645 KDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANVHQAH 466
K+VE +++ L LVR +DQ V +S R R Q + L W +
Sbjct: 47 KEVELLIMKALALDLVRGEIDQVAGVVNMSWVQPRVLNRSQIVGMASTLDTWMGAITNME 106
Query: 465 EAMKS 451
+ M++
Sbjct: 107 KLMEN 111
>AY061575-1|AAL29123.1| 428|Drosophila melanogaster SD02746p
protein.
Length = 428
Score = 30.3 bits (65), Expect = 3.5
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 493 RQQHVAQLLPLLAPERAVHRVG 558
RQQHV L P L P VH VG
Sbjct: 233 RQQHVRTLFPFLEPPTGVHSVG 254
>AF317419-1|AAK69597.1| 432|Drosophila melanogaster
lysosomal-associated transmembraneprotein protein.
Length = 432
Score = 30.3 bits (65), Expect = 3.5
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 493 RQQHVAQLLPLLAPERAVHRVG 558
RQQHV L P L P VH VG
Sbjct: 237 RQQHVRTLFPFLEPPTGVHSVG 258
>AE013599-705|AAF59049.3| 432|Drosophila melanogaster CG14767-PC,
isoform C protein.
Length = 432
Score = 30.3 bits (65), Expect = 3.5
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 493 RQQHVAQLLPLLAPERAVHRVG 558
RQQHV L P L P VH VG
Sbjct: 237 RQQHVRTLFPFLEPPTGVHSVG 258
>AE013599-704|AAF59050.2| 432|Drosophila melanogaster CG14767-PB,
isoform B protein.
Length = 432
Score = 30.3 bits (65), Expect = 3.5
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 493 RQQHVAQLLPLLAPERAVHRVG 558
RQQHV L P L P VH VG
Sbjct: 237 RQQHVRTLFPFLEPPTGVHSVG 258
>AE013599-703|AAM68833.2| 428|Drosophila melanogaster CG14767-PA,
isoform A protein.
Length = 428
Score = 30.3 bits (65), Expect = 3.5
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 493 RQQHVAQLLPLLAPERAVHRVG 558
RQQHV L P L P VH VG
Sbjct: 233 RQQHVRTLFPFLEPPTGVHSVG 254
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,720,629
Number of Sequences: 53049
Number of extensions: 566202
Number of successful extensions: 1293
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4024321392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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