Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d04
(844 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70855-1|AAB09161.1| 390|Caenorhabditis elegans Hypothetical pr... 79 5e-15
Z49130-6|CAA88971.1| 387|Caenorhabditis elegans Hypothetical pr... 46 3e-05
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 30 2.4
U50071-6|AAQ91911.1| 1004|Caenorhabditis elegans Uncoordinated p... 29 5.5
U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated p... 29 5.5
U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated p... 29 5.5
U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated p... 29 5.5
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 5.5
U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin pr... 29 5.5
U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin pr... 29 5.5
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 5.5
U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein. 29 5.5
Z99270-1|CAB16470.4| 500|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z81563-3|CAB04565.1| 222|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 28 9.5
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 9.5
AL110495-2|CAB60410.1| 203|Caenorhabditis elegans Hypothetical ... 28 9.5
>U70855-1|AAB09161.1| 390|Caenorhabditis elegans Hypothetical
protein K08F11.3 protein.
Length = 390
Score = 78.6 bits (185), Expect = 5e-15
Identities = 43/134 (32%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Frame = -2
Query: 840 LTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNI--KKMRILSFMQMAETNPDLTFDEII 667
L +F+S L Y+ F + +FV ++ L ++ I KK+R+L+ M +AE +++ DE+
Sbjct: 251 LELFISGTLKDYKEFVAKNPKFV-TEHLKVDETILLKKIRLLTLMSLAEEKNEISLDELA 309
Query: 666 SELQI-EEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAW 490
+L I ++ +E FVI+ ++ + ++++ RT+ VS+ HR FG EQW L L
Sbjct: 310 KQLDILADETLEEFVIDAIQVNAISGKINEMARTLIVSSYQHRRFGTEQWVLLEKRLKVL 369
Query: 489 RANVHQAHEAMKSV 448
AN+ Q H + V
Sbjct: 370 IANLKQTHNNVHEV 383
>Z49130-6|CAA88971.1| 387|Caenorhabditis elegans Hypothetical
protein T06D8.8 protein.
Length = 387
Score = 46.4 bits (105), Expect = 3e-05
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Frame = -2
Query: 735 KMRILSFMQMAETNP----DLTFDEIISELQIEEKDVEAFVIEVLKTRLVRARMDQAQRT 568
K+R+++ M++A + P ++F EI ++ QI +VE V++ L L+R ++Q ++
Sbjct: 280 KIRLMAVMELAVSRPTKARSVSFKEIATKCQIPFDEVEFLVMKALSKDLIRGDINQVEQV 339
Query: 567 VRVSNTMHRTFGREQWQQLRDVLLAWRANVH 475
V V+ R Q Q+ + AWR +V+
Sbjct: 340 VYVTWVQPRVLDNPQIMQMATRISAWRNDVN 370
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical
protein F21C10.7 protein.
Length = 2541
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = -2
Query: 828 VSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKM--RILSFMQMAETNPDLTFDEIISELQ 655
V E++ +QT V + + ++ ++++ RI SF A+ + T + + E Q
Sbjct: 598 VIEEIQMWQTDVLEFIGKVDNSTVTKKEEVEEIQKRIASFKSAADMHKS-TLETLKEENQ 656
Query: 654 IEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQ 514
EE+ + + + KT V+ R+DQ + V +++ + + WQ+
Sbjct: 657 NEEQ-ISRINVLIDKTDYVKTRLDQLSQKVELTSLLKIVEDVQIWQE 702
>U50071-6|AAQ91911.1| 1004|Caenorhabditis elegans Uncoordinated
protein 44, isoform g protein.
Length = 1004
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 508 AQLLPLLAPERAVHRVGHADRALRLVHAGAHQTSLQYFNYECFHI 642
AQ L P R+G+ D + L+ AGA+ + NY HI
Sbjct: 486 AQARELQTPLHIASRLGNTDIVILLLQAGANSNATTRDNYSPLHI 530
>U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated
protein 44, isoform a protein.
Length = 2039
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 508 AQLLPLLAPERAVHRVGHADRALRLVHAGAHQTSLQYFNYECFHI 642
AQ L P R+G+ D + L+ AGA+ + NY HI
Sbjct: 486 AQARELQTPLHIASRLGNTDIVILLLQAGANSNATTRDNYSPLHI 530
>U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated
protein 44, isoform e protein.
Length = 1841
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 508 AQLLPLLAPERAVHRVGHADRALRLVHAGAHQTSLQYFNYECFHI 642
AQ L P R+G+ D + L+ AGA+ + NY HI
Sbjct: 486 AQARELQTPLHIASRLGNTDIVILLLQAGANSNATTRDNYSPLHI 530
>U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated
protein 44, isoform c protein.
Length = 1867
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 508 AQLLPLLAPERAVHRVGHADRALRLVHAGAHQTSLQYFNYECFHI 642
AQ L P R+G+ D + L+ AGA+ + NY HI
Sbjct: 486 AQARELQTPLHIASRLGNTDIVILLLQAGANSNATTRDNYSPLHI 530
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 508 AQLLPLLAPERAVHRVGHADRALRLVHAGAHQTSLQYFNYECFHI 642
AQ L P R+G+ D + L+ AGA+ + NY HI
Sbjct: 486 AQARELQTPLHIASRLGNTDIVILLLQAGANSNATTRDNYSPLHI 530
>U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin
protein.
Length = 1815
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 508 AQLLPLLAPERAVHRVGHADRALRLVHAGAHQTSLQYFNYECFHI 642
AQ L P R+G+ D + L+ AGA+ + NY HI
Sbjct: 486 AQARELQTPLHIASRLGNTDIVILLLQAGANSNATTRDNYSPLHI 530
>U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin
protein.
Length = 1867
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 508 AQLLPLLAPERAVHRVGHADRALRLVHAGAHQTSLQYFNYECFHI 642
AQ L P R+G+ D + L+ AGA+ + NY HI
Sbjct: 486 AQARELQTPLHIASRLGNTDIVILLLQAGANSNATTRDNYSPLHI 530
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 508 AQLLPLLAPERAVHRVGHADRALRLVHAGAHQTSLQYFNYECFHI 642
AQ L P R+G+ D + L+ AGA+ + NY HI
Sbjct: 486 AQARELQTPLHIASRLGNTDIVILLLQAGANSNATTRDNYSPLHI 530
>U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein.
Length = 1786
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 508 AQLLPLLAPERAVHRVGHADRALRLVHAGAHQTSLQYFNYECFHI 642
AQ L P R+G+ D + L+ AGA+ + NY HI
Sbjct: 486 AQARELQTPLHIASRLGNTDIVILLLQAGANSNATTRDNYSPLHI 530
>Z99270-1|CAB16470.4| 500|Caenorhabditis elegans Hypothetical
protein Y37A1A.3 protein.
Length = 500
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +2
Query: 92 YPFGLHYYFKTPSPSSNYKFMSFTRHVNTDTNNHISKLKGKGIYLNSLIIFQN*KTKVFI 271
+ FG P+ + KF++ ++H N +N +S L+ + ++ + I F T F+
Sbjct: 37 FSFGFQLLITNPAQGAFIKFLNASKHSNNPDDNELSHLENEWSFIVA-IFFLGSATGAFL 95
>Z81563-3|CAB04565.1| 222|Caenorhabditis elegans Hypothetical
protein K04H8.3 protein.
Length = 222
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 526 LAPERAVHRVGHADRALRLVHAGAHQTSLQYFNYECFHIFLFNLKFRYNLIKC 684
+ P RA+ + A+ +L L Q +L+Y+N+ C F + K L C
Sbjct: 84 VVPMRAISKASAAEPSLGLHGITEQQLNLRYYNFICSSHFHLDCKLTETLQIC 136
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
F22E10.2 protein.
Length = 1324
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 398 SHNFVYYTYCNCFGLVILLCYNISQNLSVIF 306
S NF+YY C CF L I + Q + F
Sbjct: 995 SQNFMYYMSCFCFALAIRIINQGDQTVDKTF 1025
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
K07E12.1b protein.
Length = 12268
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 65 LKKGLSFYYYPFGLHYYFKTPSPSSNYKFMSFTRHVN 175
+K G+S + Y Y F+ P S + SFT +N
Sbjct: 12228 VKNGISVFIYSSSYSYIFQNPPKSVTFHHSSFTFSLN 12264
>AL110495-2|CAB60410.1| 203|Caenorhabditis elegans Hypothetical
protein Y60A9.3 protein.
Length = 203
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 750 EQNIKKMRILSFMQMAETNPDLTFDEIISELQIEEKDVEAF 628
+QN K ++ S+ +A +P DE+ E++ +K EAF
Sbjct: 49 QQNETKPKLASYQSLANQDPCTIPDELHQEMKRSKKKEEAF 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,356,873
Number of Sequences: 27780
Number of extensions: 309392
Number of successful extensions: 803
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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