Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d04
(844 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 24 1.5
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 24 1.5
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 24 1.5
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 24 1.5
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 23 3.5
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 23 3.5
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 23 3.5
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 23 3.5
AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc fi... 23 4.7
S76956-1|AAB33931.1| 168|Apis mellifera olfactory receptor prot... 22 6.2
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 22 6.2
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 22 6.2
AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein. 22 6.2
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 8.1
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 24.2 bits (50), Expect = 1.5
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 128 SPSSNYKFMSFTRHVNTDTNNHISKLKG--KGIYLNSLI 238
S S+NYK+ ++ + N NN+ + K +Y N +I
Sbjct: 84 SLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYII 122
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 24.2 bits (50), Expect = 1.5
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 128 SPSSNYKFMSFTRHVNTDTNNHISKLKG--KGIYLNSLI 238
S S+NYK+ ++ + N NN+ + K +Y N +I
Sbjct: 84 SLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYII 122
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 24.2 bits (50), Expect = 1.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 37 MTLIPKFRLFKKRAFILLLSIWITLLFQDT 126
M L+PK F ++ L W+TL++ D+
Sbjct: 73 MQLLPKLMEFDDWTSVMELHSWMTLMWTDS 102
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 24.2 bits (50), Expect = 1.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 128 SPSSNYKFMSFTRHVNTDTNNHISKLKGKGIYLNSLI 238
S S+NYK+ ++ + N + NN+ + K Y N +I
Sbjct: 317 SLSNNYKYSNYNNYNNYNNNNY-NNYNKKLYYKNYII 352
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 3.5
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SPSSNYKFMSFTRHVNTDTNNH 193
S S+NYK+ ++ + N + NN+
Sbjct: 84 SLSNNYKYSNYNNYNNNNYNNN 105
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 3.5
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SPSSNYKFMSFTRHVNTDTNNH 193
S S+NYK+ ++ + N + NN+
Sbjct: 84 SLSNNYKYSNYNNYNNNNYNNN 105
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 3.5
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SPSSNYKFMSFTRHVNTDTNNH 193
S S+NYK+ ++ + N + NN+
Sbjct: 84 SLSNNYKYSNYNNYNNNNYNNN 105
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 3.5
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SPSSNYKFMSFTRHVNTDTNNH 193
S S+NYK+ ++ + N + NN+
Sbjct: 84 SLSNNYKYSNYNNYNNNNYNNN 105
>AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc
finger domain-Z1 isoform protein.
Length = 111
Score = 22.6 bits (46), Expect = 4.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -2
Query: 828 VSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKM 730
+ +++ S NHK H Q +EQ K+M
Sbjct: 37 ICKRVYSSLNSLRNHKSIYHRQHSKNEQQRKEM 69
>S76956-1|AAB33931.1| 168|Apis mellifera olfactory receptor
protein.
Length = 168
Score = 22.2 bits (45), Expect = 6.2
Identities = 9/36 (25%), Positives = 17/36 (47%)
Frame = -3
Query: 401 CSHNFVYYTYCNCFGLVILLCYNISQNLSVIFTTSG 294
C N + +C+ L+ L+C + N +F +G
Sbjct: 48 CGPNVINPFFCDMSPLLSLVCADTRLNKLAVFIVAG 83
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 22.2 bits (45), Expect = 6.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 789 NHKEFVHSQGLNHEQNIKKM 730
NHK F + +N ++N+K M
Sbjct: 494 NHKPFTYHIVVNSDKNVKGM 513
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 22.2 bits (45), Expect = 6.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 789 NHKEFVHSQGLNHEQNIKKM 730
NHK F + +N ++N+K M
Sbjct: 494 NHKPFTYHIVVNSDKNVKGM 513
>AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein.
Length = 226
Score = 22.2 bits (45), Expect = 6.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 789 NHKEFVHSQGLNHEQNIKKM 730
NHK F + +N ++N+K M
Sbjct: 120 NHKPFTYHIVVNSDKNVKGM 139
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 21.8 bits (44), Expect = 8.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 533 PNVRCIVLDTRTVRC 577
P+V CIV ++ T+ C
Sbjct: 135 PSVECIVFNSGTILC 149
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,859
Number of Sequences: 438
Number of extensions: 4022
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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