Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d03
(896 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q00732 Cluster: p48 protein; n=16; Nucleopolyhedrovirus... 248 1e-64
UniRef50_P41482 Cluster: Uncharacterized 13.3 kDa protein in P6.... 185 1e-45
UniRef50_P24651 Cluster: p48 protein; n=7; Nucleopolyhedrovirus|... 161 2e-38
UniRef50_Q4KSY4 Cluster: P45; n=3; Nucleopolyhedrovirus|Rep: P45... 101 2e-20
UniRef50_P24652 Cluster: Uncharacterized 12.2 kDa protein in P6.... 82 2e-14
UniRef50_A0EYY5 Cluster: P45; n=4; Nucleopolyhedrovirus|Rep: P45... 73 1e-11
UniRef50_Q4KSY5 Cluster: P12; n=2; Nucleopolyhedrovirus|Rep: P12... 67 7e-10
UniRef50_Q7T9U6 Cluster: ORF_69; n=9; Granulovirus|Rep: ORF_69 -... 52 2e-05
UniRef50_Q9YMM4 Cluster: LdOrf-103 peptide; n=1; Lymantria dispa... 51 5e-05
UniRef50_Q287K2 Cluster: P12; n=3; Nucleopolyhedrovirus|Rep: P12... 50 6e-05
UniRef50_Q0N414 Cluster: P12; n=1; Clanis bilineata nucleopolyhe... 50 1e-04
UniRef50_Q99GV9 Cluster: ORF93; n=3; Nucleopolyhedrovirus|Rep: O... 47 6e-04
UniRef50_Q91BD5 Cluster: Putative uncharacterized protein; n=1; ... 47 6e-04
UniRef50_Q80LL8 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_A0EYY4 Cluster: P12; n=1; Ecotropis obliqua NPV|Rep: P1... 45 0.003
UniRef50_Q4QDY2 Cluster: Putative uncharacterized protein; n=2; ... 36 1.4
UniRef50_Q12267 Cluster: Structural maintenance of chromosomes p... 34 5.7
UniRef50_Q31FP5 Cluster: Methyl-accepting chemotaxis protein pre... 33 9.9
>UniRef50_Q00732 Cluster: p48 protein; n=16;
Nucleopolyhedrovirus|Rep: p48 protein - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 387
Score = 248 bits (608), Expect = 1e-64
Identities = 120/140 (85%), Positives = 124/140 (88%)
Frame = -2
Query: 811 LNAQCNGFSTAANGNRLLLPFKNFMIKMGRNTNMKKVNKIASTVLIGFYLRHYLESLPNK 632
L+AQCNG ST ANG+RLLLPFKNFMI+MGRNT MKKVNKIASTVLIGFYLRHYLESLPNK
Sbjct: 248 LSAQCNGCSTVANGDRLLLPFKNFMIEMGRNTKMKKVNKIASTVLIGFYLRHYLESLPNK 307
Query: 631 AYPVAELELRNVCRFIMSKYSDEXXXXXXXXXXXXXIDICNVLMTEMIVPESFIRHIITK 452
AYPVAELELRNVCRFIMSKYSDE IDICNVLMTEMIVPE+FIRHIITK
Sbjct: 308 AYPVAELELRNVCRFIMSKYSDENINLLIHKLKLIKIDICNVLMTEMIVPETFIRHIITK 367
Query: 451 YQLDNEISLLIELNHDCFNK 392
YQLDNEISLLIELNHDCFNK
Sbjct: 368 YQLDNEISLLIELNHDCFNK 387
Score = 63.3 bits (147), Expect = 8e-09
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = -1
Query: 896 DMCVPFVKECKKATIGLRQEDHERVLSI 813
DMCVPFVKECKKAT+GLRQEDHERVLSI
Sbjct: 220 DMCVPFVKECKKATVGLRQEDHERVLSI 247
>UniRef50_P41482 Cluster: Uncharacterized 13.3 kDa protein in
P6.9-VP48 intergenic region; n=7;
Nucleopolyhedrovirus|Rep: Uncharacterized 13.3 kDa
protein in P6.9-VP48 intergenic region - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 122
Score = 185 bits (451), Expect = 1e-45
Identities = 100/123 (81%), Positives = 103/123 (83%)
Frame = -3
Query: 408 MIASINDIDDMDTGNNMSQTXXXXXXXXXXXXXAQTQMAAVDMLQTINTTASQTAASLLI 229
MIASIND D MDT +NMSQ AQTQMAAVDMLQTINT ASQTAASLLI
Sbjct: 1 MIASINDTD-MDTDDNMSQARRNRRNRPPARPSAQTQMAAVDMLQTINTAASQTAASLLI 59
Query: 228 NDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQVI 49
NDITPNKTESLKILSTQSVGAR+LLEPMQAN + IKLNRIETVNVLDFLGSVYDNTIQVI
Sbjct: 60 NDITPNKTESLKILSTQSVGARSLLEPMQANASTIKLNRIETVNVLDFLGSVYDNTIQVI 119
Query: 48 VTE 40
VTE
Sbjct: 120 VTE 122
>UniRef50_P24651 Cluster: p48 protein; n=7;
Nucleopolyhedrovirus|Rep: p48 protein - Orgyia
pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
Length = 411
Score = 161 bits (392), Expect = 2e-38
Identities = 84/159 (52%), Positives = 107/159 (67%), Gaps = 19/159 (11%)
Frame = -2
Query: 811 LNAQCNGFSTAANGNRLLLPFKNFMIKMGRNTNMKKVNKIASTVLIGFYLRHYLESLPN- 635
LN QCN STAAN +LL+PFKNFMIKMG++T +KKVNKIA+TVLIGF+LR Y+ES+P+
Sbjct: 252 LNEQCNSASTAANAPKLLMPFKNFMIKMGQHTKIKKVNKIAATVLIGFFLRQYIESMPSH 311
Query: 634 ------------------KAYPVAELELRNVCRFIMSKYSDEXXXXXXXXXXXXXIDICN 509
+ AELE+ NVCR+I +YSD+ ++I N
Sbjct: 312 YLQNLRGLLKDEHNDSRDEGCSAAELEMLNVCRYIFKRYSDKDVAVVVEKLKKITVEIMN 371
Query: 508 VLMTEMIVPESFIRHIITKYQLDNEISLLIELNHDCFNK 392
VL+ E IVPE+FIR II YQLDNEISLL++LNHDCF++
Sbjct: 372 VLIFEKIVPETFIRRIIVDYQLDNEISLLLDLNHDCFDR 410
>UniRef50_Q4KSY4 Cluster: P45; n=3; Nucleopolyhedrovirus|Rep: P45 -
Chrysodeixis chalcites nucleopolyhedrovirus
Length = 378
Score = 101 bits (243), Expect = 2e-20
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Frame = -2
Query: 769 NRLLLPFKNFMIKMGRNTNMK--KVNKIASTVLIGFYLRHYLESLPNKAYPVAELELRNV 596
++L PFK F+ ++ T +K K+NKIAS V GF+LR YLE+ NK AELE+RNV
Sbjct: 254 SKLFSPFKRFITELALKTKIKSPKINKIASIVFTGFFLRLYLEASTNKTKSAAELEMRNV 313
Query: 595 CRFIMSKYSDEXXXXXXXXXXXXXIDICNVLMTEMIVPESFIRHIITKYQLDNEISLLIE 416
CRFI Y D+ D+ + M+E IV E +IR ++TKY+LD E+ L+
Sbjct: 314 CRFIFHNYDDDKFEKFMLKLQSIKQDLFSETMSEYIVAERYIRQLVTKYKLDEELYHLLN 373
Query: 415 LN 410
N
Sbjct: 374 DN 375
>UniRef50_P24652 Cluster: Uncharacterized 12.2 kDa protein in
P6.5-VP48 intergenic region; n=5;
Nucleopolyhedrovirus|Rep: Uncharacterized 12.2 kDa
protein in P6.5-VP48 intergenic region - Orgyia
pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
Length = 112
Score = 81.8 bits (193), Expect = 2e-14
Identities = 41/85 (48%), Positives = 56/85 (65%)
Frame = -3
Query: 303 TQMAAVDMLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKI 124
TQ+AA +ML +N ++TAAS ++ D + NK SL L QS+ AR L+E +QA I
Sbjct: 27 TQLAAAEMLHNMN--GAETAASFIVKDASENKIASLTTLGNQSIAARKLVESLQAGAPTI 84
Query: 123 KLNRIETVNVLDFLGSVYDNTIQVI 49
KLNR +TVNVL FL VY N ++V+
Sbjct: 85 KLNREDTVNVLKFLNDVYTNQLEVV 109
>UniRef50_A0EYY5 Cluster: P45; n=4; Nucleopolyhedrovirus|Rep: P45 -
Ecotropis obliqua NPV
Length = 397
Score = 72.9 bits (171), Expect = 1e-11
Identities = 52/145 (35%), Positives = 74/145 (51%), Gaps = 25/145 (17%)
Frame = -2
Query: 763 LLLPFKNFMIKMGRNTNMK--KVNKIASTVLIGFYLRHYLE--------------SLPNK 632
L LPFKNF+I++ T +K K+NKIAS V GFYLR Y+E S K
Sbjct: 257 LFLPFKNFIIQLACKTKIKQAKINKIASVVFTGFYLRIYIEAATPRLINNQNGNNSALRK 316
Query: 631 AYPVA---------ELELRNVCRFIMSKYSDEXXXXXXXXXXXXXIDICNVLMTEMIVPE 479
YP E+ELRNVCRF++ Y++E D+ + + IV E
Sbjct: 317 QYPFGGPGKTLTPYEMELRNVCRFLLPTYTNEQFENFINKLYGIKQDLS---IDQYIVTE 373
Query: 478 SFIRHIITKYQLDNEISLLIELNHD 404
IR +++K+ LD + ++L LNH+
Sbjct: 374 KLIRQLVSKHNLDEDFAVL--LNHN 396
>UniRef50_Q4KSY5 Cluster: P12; n=2; Nucleopolyhedrovirus|Rep: P12 -
Chrysodeixis chalcites nucleopolyhedrovirus
Length = 117
Score = 66.9 bits (156), Expect = 7e-10
Identities = 28/83 (33%), Positives = 51/83 (61%)
Frame = -3
Query: 297 MAAVDMLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKL 118
M + + LQ +N T T A +++ND P K +++++S QS A+ +LE + E I+L
Sbjct: 35 MNSAEFLQNLNQT--NTVADVILNDTNPQKRNAIRVISKQSAIAKTILEAISNEEQSIRL 92
Query: 117 NRIETVNVLDFLGSVYDNTIQVI 49
N ++T+NVL + ++YDN ++
Sbjct: 93 NTVKTINVLQLMSNIYDNKFVIV 115
>UniRef50_Q7T9U6 Cluster: ORF_69; n=9; Granulovirus|Rep: ORF_69 -
Adoxophyes orana granulovirus (AoGV)
Length = 396
Score = 52.4 bits (120), Expect = 2e-05
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Frame = -2
Query: 766 RLLLPFKNFMIKMGRNTNMKKVNKIASTVLIGFYLRHYLESLP-----NKA---YPVAEL 611
+L P + F+ K + ++K+ K+ + IGFYLR YLE+ NK V +
Sbjct: 269 KLYTPLRQFVEK---HFSLKQAGKLVHKIFIGFYLRIYLEAKKRNDARNKHKVNINVFNI 325
Query: 610 ELRNVCRFIMSKYSDEXXXXXXXXXXXXXIDICNVLMTEMIVPESFIRHIITKYQLDNEI 431
E+RNVCR + Y ++ D+ + + P+ + + KY L N+I
Sbjct: 326 EMRNVCRVLFRDYDNDEFENIIDKIEQIRNDLFIEMSDNYVTPKECVVRMFNKYNLKNDI 385
Query: 430 SLLIE 416
S L++
Sbjct: 386 SKLLQ 390
>UniRef50_Q9YMM4 Cluster: LdOrf-103 peptide; n=1; Lymantria dispar
MNPV|Rep: LdOrf-103 peptide - Lymantria dispar
multicapsid nuclear polyhedrosis virus (LdMNPV)
Length = 121
Score = 50.8 bits (116), Expect = 5e-05
Identities = 26/78 (33%), Positives = 46/78 (58%)
Frame = -3
Query: 282 MLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIET 103
++ +N S A +L ND + NK ++ LS S A+++L +Q N+ ++L+ +
Sbjct: 45 LINALNDNMSSVALHIL-NDTSENKADTFGKLSRTSAVAKSILADIQDNQETMRLDAAKG 103
Query: 102 VNVLDFLGSVYDNTIQVI 49
V VL L ++YDNTI++I
Sbjct: 104 VAVLQLLNNIYDNTIRLI 121
>UniRef50_Q287K2 Cluster: P12; n=3; Nucleopolyhedrovirus|Rep: P12 -
Agrotis segetum nuclear polyhedrosis virus (AsNPV)
Length = 113
Score = 50.4 bits (115), Expect = 6e-05
Identities = 26/83 (31%), Positives = 47/83 (56%)
Frame = -3
Query: 297 MAAVDMLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKL 118
M A +L ++N T T A L++ND +K S+ ++ S A+ +L+ + E+ ++L
Sbjct: 32 MWADQLLNSLNETT--TVADLILNDTDEHKRISMGVIGQHSAIAKTILDYIDEEES-LRL 88
Query: 117 NRIETVNVLDFLGSVYDNTIQVI 49
+ T+NVL + +YDN I V+
Sbjct: 89 GTVNTINVLKLMSDIYDNKIPVV 111
>UniRef50_Q0N414 Cluster: P12; n=1; Clanis bilineata
nucleopolyhedrosis virus|Rep: P12 - Clanis bilineata
nucleopolyhedrosis virus
Length = 120
Score = 49.6 bits (113), Expect = 1e-04
Identities = 23/73 (31%), Positives = 44/73 (60%)
Frame = -3
Query: 282 MLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIET 103
M+ T+N + + A+L++ND + K S ++LS S A+N+ + + + ++LN +
Sbjct: 47 MVNTLNEYTN-SLATLILNDESAKKRVSFEVLSKSSAAAKNIFKDIVDDRDAVRLNTLRA 105
Query: 102 VNVLDFLGSVYDN 64
V+VL L ++YDN
Sbjct: 106 VSVLRLLSNIYDN 118
>UniRef50_Q99GV9 Cluster: ORF93; n=3; Nucleopolyhedrovirus|Rep:
ORF93 - Helicoverpa zea SNPV
Length = 122
Score = 47.2 bits (107), Expect = 6e-04
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = -3
Query: 303 TQMAAVDMLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKI 124
+++ + +Q++N T AS ++ D TP+K L IL+ QS A+ LL+ ++ KI
Sbjct: 37 SEVPIAEFVQSLNEL--DTLASTILKDPTPHKRNVLSILAKQSAVAKRLLDVIENGNDKI 94
Query: 123 KLN-RIETVNVLDFLGSVYDN 64
KLN ++ + L ++DN
Sbjct: 95 KLNGSMQAIETLRLFSDIFDN 115
>UniRef50_Q91BD5 Cluster: Putative uncharacterized protein; n=1;
Spodoptera litura NPV|Rep: Putative uncharacterized
protein - Spodoptera litura multicapsid
nucleopolyhedrovirus (SpltMNPV)
Length = 121
Score = 47.2 bits (107), Expect = 6e-04
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = -3
Query: 288 VDMLQTINTTAS-QTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNR 112
+D Q IN T+A ++ D + N+ E+L++LS QS A+ ++ + ++K N
Sbjct: 40 IDPSQIINELNDVNTSAHAVLTDRSDNRLETLQVLSNQSNIAKKIVTAANNRDDRVKFNV 99
Query: 111 IETVNVLDFLGSVYDNTIQVI 49
+ET+ +L + +YDN ++
Sbjct: 100 VETMELLRLMTDLYDNKFLIV 120
>UniRef50_Q80LL8 Cluster: Putative uncharacterized protein; n=1;
Adoxophyes honmai NPV|Rep: Putative uncharacterized
protein - Adoxophyes honmai nucleopolyhedrovirus
Length = 99
Score = 46.0 bits (104), Expect = 0.001
Identities = 21/68 (30%), Positives = 39/68 (57%)
Frame = -3
Query: 261 TASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFL 82
T T+A +ND + NK + LS +S A+ +L+ ++ +++ ++ N I TVN L L
Sbjct: 30 TEFNTSAKRFLNDTSKNKELYFRDLSKRSATAKKILKCIEDDQSAVQFNLISTVNFLKLL 89
Query: 81 GSVYDNTI 58
++DN +
Sbjct: 90 SDIHDNNV 97
>UniRef50_A0EYY4 Cluster: P12; n=1; Ecotropis obliqua NPV|Rep: P12 -
Ecotropis obliqua NPV
Length = 140
Score = 44.8 bits (101), Expect = 0.003
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = -3
Query: 294 AAVDMLQTINTTAS--QTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIK 121
+A+D + IN+ S + AS +I D + K + KILS S A+ +L+ ++ ++ +
Sbjct: 60 SAIDPVTLINSLNSNNKNMASFIIADESLKKQNTFKILSKVSSSAKGVLKDIEDDKESMP 119
Query: 120 LNRIETVNVLDFLGSVYDN 64
L + NVL L ++YDN
Sbjct: 120 LTTLRATNVLRLLSNIYDN 138
>UniRef50_Q4QDY2 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 90
Score = 35.9 bits (79), Expect = 1.4
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -1
Query: 275 KPSTPRPLKRPRRC*STTLRPIKLKV*KFCLLNLSERAICWNRCKP 138
KPS PRP++RPRRC S + PI L CL + +R C P
Sbjct: 13 KPSPPRPVERPRRC-SRPVLPIVLLQAFDCLTSAGKREKHQRGCSP 57
>UniRef50_Q12267 Cluster: Structural maintenance of chromosomes
protein 4; n=5; Saccharomycetales|Rep: Structural
maintenance of chromosomes protein 4 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 1418
Score = 33.9 bits (74), Expect = 5.7
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -3
Query: 285 DMLQTINTTASQTAASLLINDITPNKTESLKI-LSTQSVGARNLLEPMQANETKIKLNRI 109
D L+ I T +L ND N+T +LK+ L QS + +E M+ + + K I
Sbjct: 1028 DELKVIEEQLKHTKLALAENDTNMNETLNLKVELKEQSEQLKEQMEDMEESINEFKSIEI 1087
Query: 108 ETVNVLDFLGSV 73
E N L+ L S+
Sbjct: 1088 EMKNKLEKLNSL 1099
>UniRef50_Q31FP5 Cluster: Methyl-accepting chemotaxis protein
precursor; n=1; Thiomicrospira crunogena XCL-2|Rep:
Methyl-accepting chemotaxis protein precursor -
Thiomicrospira crunogena (strain XCL-2)
Length = 330
Score = 33.1 bits (72), Expect = 9.9
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = -3
Query: 207 TESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQVIVTE 40
TE KI+ ARN +E M + + +++ +++ V DFL + DN Q+ + +
Sbjct: 265 TEIQKIIEELQQRARNAVEVMGSGQERVEATQMQAGKVNDFLHEIEDNLSQLKIAQ 320
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 831,191,275
Number of Sequences: 1657284
Number of extensions: 16227954
Number of successful extensions: 41833
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 39913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41782
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81161904978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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