Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d02
(888 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B6381 Cluster: PREDICTED: similar to ran gtpase... 49 2e-04
UniRef50_UPI0000DB7257 Cluster: PREDICTED: similar to Ran GTPase... 48 3e-04
UniRef50_Q08BV5 Cluster: Zgc:154097; n=3; Danio rerio|Rep: Zgc:1... 42 0.021
UniRef50_Q4CPG8 Cluster: Putative uncharacterized protein; n=2; ... 42 0.028
UniRef50_UPI0000D559B4 Cluster: PREDICTED: similar to Ran GTPase... 41 0.048
UniRef50_Q01D83 Cluster: Homology to unknown gene; n=2; Ostreoco... 41 0.048
UniRef50_Q22AC0 Cluster: Leucine Rich Repeat family protein; n=1... 39 0.20
UniRef50_Q015S4 Cluster: Homology to unknown gene; n=2; Ostreoco... 38 0.34
UniRef50_Q1JSF8 Cluster: Putative uncharacterized protein; n=1; ... 38 0.34
UniRef50_Q5ZU50 Cluster: Leucine-rich repeat-containing protein;... 37 0.60
UniRef50_Q86WI3-4 Cluster: Isoform 4 of Q86WI3 ; n=6; Homo sapie... 37 0.79
UniRef50_Q86WI3 Cluster: Protein NLRC5; n=19; Eutheria|Rep: Prot... 37 0.79
UniRef50_UPI000069F3F1 Cluster: Erythrocyte membrane protein ban... 36 1.0
UniRef50_A0TYA6 Cluster: Putative uncharacterized protein precur... 36 1.4
UniRef50_UPI0000E81099 Cluster: PREDICTED: hypothetical protein;... 35 2.4
UniRef50_UPI0000E24C81 Cluster: PREDICTED: hypothetical protein;... 35 2.4
UniRef50_Q2INF4 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_Q2IFN9 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_Q964V6 Cluster: DeliriumA; n=2; Dictyostelium discoideu... 35 2.4
UniRef50_A3H4M7 Cluster: GTP pyrophosphokinase; n=9; Vibrio|Rep:... 35 3.2
UniRef50_Q8NAJ2 Cluster: Putative uncharacterized protein C9orf1... 35 3.2
UniRef50_Q993H1 Cluster: ORF39; n=1; Callitrichine herpesvirus 3... 34 4.2
UniRef50_A3K4M9 Cluster: T-DNA border endonuclease, VirD2 protei... 34 4.2
UniRef50_A0Z0W1 Cluster: Polyprenyl synthetase; n=1; marine gamm... 34 4.2
UniRef50_Q01CE8 Cluster: Homology to unknown gene; n=2; Ostreoco... 34 4.2
UniRef50_UPI0000F2EBE8 Cluster: PREDICTED: similar to Ac1147; n=... 34 5.6
UniRef50_UPI0000F2D4EF Cluster: PREDICTED: hypothetical protein;... 34 5.6
UniRef50_UPI000023E6FE Cluster: hypothetical protein FG03939.1; ... 34 5.6
UniRef50_Q0EZT1 Cluster: GTP pyrophosphokinase; n=1; Mariprofund... 34 5.6
UniRef50_A1TL74 Cluster: Putative uncharacterized protein; n=1; ... 34 5.6
UniRef50_Q2QU42 Cluster: Leucine Rich Repeat family protein, exp... 34 5.6
UniRef50_Q9VIW3 Cluster: Ran GTPase-activating protein; n=2; Sop... 34 5.6
UniRef50_UPI0000EBE777 Cluster: PREDICTED: hypothetical protein;... 33 7.4
UniRef50_Q3JWI9 Cluster: PilL; n=5; Burkholderia|Rep: PilL - Bur... 33 9.7
UniRef50_Q68A46 Cluster: Leucine-rich repeat protein; n=4; Ralst... 33 9.7
UniRef50_A7DBF4 Cluster: Putative uncharacterized protein precur... 33 9.7
UniRef50_A5NZ82 Cluster: ABC transporter related precursor; n=3;... 33 9.7
>UniRef50_UPI00015B6381 Cluster: PREDICTED: similar to ran
gtpase-activating protein; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ran gtpase-activating protein -
Nasonia vitripennis
Length = 587
Score = 48.8 bits (111), Expect = 2e-04
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Frame = -3
Query: 445 VERFLKDPSVKH-LNSLGDRAAELIDAHLQMIRDPDAMTEAYA--------QAVXXXXXX 293
VE FLK P+ ++ L GD+A ID H++ + PD + A+
Sbjct: 414 VEEFLKAPTGENFLLMQGDKAQSFID-HIRNLSQPDGEDQTSGVLKVVMKVSALCASGYM 472
Query: 292 XXXXXXXXXXXXXLYPLFIARAKRQM--ALANSLLPGLGLIKWENKDY-KIRWDLPGCYS 122
LF K +L N+LL LGL+K E+K+ KI W+L GC+
Sbjct: 473 DIRQPAEQVTERLYSELFTNAVKNNQIPSLNNALLVCLGLLKGEDKNSSKIDWNLEGCFK 532
Query: 121 ILANVLDEAYFPAGLRDTLRFFITSKLPTLPTEI 20
L V YF ++TL+ FI + T +
Sbjct: 533 ALEKVSQRDYFLQQTKETLKVFIDRPMKPSRTRV 566
>UniRef50_UPI0000DB7257 Cluster: PREDICTED: similar to Ran
GTPase-activating protein 1; n=1; Apis mellifera|Rep:
PREDICTED: similar to Ran GTPase-activating protein 1 -
Apis mellifera
Length = 580
Score = 48.0 bits (109), Expect = 3e-04
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = -3
Query: 205 NSLLPGLGLIKWENKDY-KIRWDLPGCYSILANVLDEAYFPAGLRDTLRFFI 53
N+LL LGLIK E+K+ KI W+L GC+ L V + YF R+TL+FF+
Sbjct: 497 NALLVNLGLIKAEDKNSGKIDWNLEGCFKALEIVSQKDYFLQETRNTLKFFL 548
>UniRef50_Q08BV5 Cluster: Zgc:154097; n=3; Danio rerio|Rep: Zgc:154097
- Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 570
Score = 41.9 bits (94), Expect = 0.021
Identities = 63/269 (23%), Positives = 107/269 (39%), Gaps = 2/269 (0%)
Frame = -3
Query: 886 SRGARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSL 707
S GA ALA+ + L+ L+LS EI EA +E+ ++ +++ ++ L GNSL
Sbjct: 278 SEGASALAETVREGLPILKELNLSFGEIMEEAALEVAQSVQH----KDQFEKLDLNGNSL 333
Query: 706 GNAANKKSLKDKLGASAELSDGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 527
G K SLK +L S ++D G
Sbjct: 334 GEDGCK-SLK-QLMESINMADKLGSLSDDEGEPEDDEDDDDDDDDDDDDDEDVEEEE--- 388
Query: 526 DIRDIDTVIDVKEISLDDSGREDIQSDVERFLKDPSVKHLNSLGDRAAELIDAHLQMIRD 347
+ + ++ + S S DV FL PS L LG++ + LI + ++ D
Sbjct: 389 --EEEEEKTELNQFSTPPSAPRT--PDVSSFLSFPSPDKLLRLGEKRSVLIQQQVDVL-D 443
Query: 346 PDAMTEAYAQ--AVXXXXXXXXXXXXXXXXXXXLYPLFIARAKRQMALANSLLPGLGLIK 173
EA+ + +V L F + + +A +SLL +GL+K
Sbjct: 444 VCKTAEAFLKISSVYKDNDAEVKSAVLESIDAVLSKAFFTPSFQGLAFVSSLLVMVGLLK 503
Query: 172 WENKDYKIRWDLPGCYSILANVLDEAYFP 86
E+K ++ +PG L + + ++YFP
Sbjct: 504 SEDKLKPVK-VVPGHLLCLEHAVKQSYFP 531
>UniRef50_Q4CPG8 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma|Rep: Putative uncharacterized protein -
Trypanosoma cruzi
Length = 432
Score = 41.5 bits (93), Expect = 0.028
Identities = 26/63 (41%), Positives = 33/63 (52%)
Frame = -3
Query: 886 SRGARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSL 707
SRGA ALA A + L+ LD+SHN I E L A T + E LS ++L N +
Sbjct: 135 SRGATALADAMQNGFRSLQYLDVSHNAIDAEGANALAAAAT----THEALSTLLLRSNPI 190
Query: 706 GNA 698
G A
Sbjct: 191 GGA 193
>UniRef50_UPI0000D559B4 Cluster: PREDICTED: similar to Ran
GTPase-activating protein 1; n=1; Tribolium
castaneum|Rep: PREDICTED: similar to Ran
GTPase-activating protein 1 - Tribolium castaneum
Length = 534
Score = 40.7 bits (91), Expect = 0.048
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = -3
Query: 205 NSLLPGLGLIKWENKDYKIRWDLPGCYSILANVLDEAYFPAGLRDTLRFFI 53
N++L LGLIK E+K +K W+L C L +V+D+ Y ++T F+
Sbjct: 476 NTILIHLGLIKAEDKKFKPTWNLDACAKALRSVMDKNYVTEITKNTFTVFL 526
Score = 34.7 bits (76), Expect = 3.2
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = -3
Query: 880 GARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSLGN 701
GA +LA K LE L L HNEI + ++LV A+ ++ +L + L GN G
Sbjct: 280 GAISLANVLKTGHANLEELTLGHNEIRLKGGLQLVKAMA----NKSKLKVLNLNGNQFGE 335
Query: 700 AANKK 686
K+
Sbjct: 336 DGRKQ 340
>UniRef50_Q01D83 Cluster: Homology to unknown gene; n=2;
Ostreococcus|Rep: Homology to unknown gene -
Ostreococcus tauri
Length = 517
Score = 40.7 bits (91), Expect = 0.048
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = -3
Query: 880 GARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSLGN 701
GA + A K N+ L SL L+ N+IG E C++L + L E+++ + L NS+G
Sbjct: 237 GASSFGAALKENT-GLRSLQLNGNDIGNEGCIKLCEG---LAARSEKINNLDLGNNSIGP 292
Query: 700 AANKKSLKDKLGASAELS 647
AA +L+D L L+
Sbjct: 293 AAG-PALRDYLKVDDSLT 309
>UniRef50_Q22AC0 Cluster: Leucine Rich Repeat family protein; n=1;
Tetrahymena thermophila SB210|Rep: Leucine Rich Repeat
family protein - Tetrahymena thermophila SB210
Length = 1715
Score = 38.7 bits (86), Expect = 0.20
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = -3
Query: 871 ALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSLGNAAN 692
+L+ A K + L+SLDLS+N I +++ ++I + P+SQ L R+ L GN +
Sbjct: 342 SLSLALKSRNCQLKSLDLSNNYITDNGAIKIFESIKQSPNSQ--LQRVNLIGNYISEQCE 399
Query: 691 KKSLKD--KLGASAELSDGE 638
+++ +LG+S + G+
Sbjct: 400 NYLIQNNTQLGSSFKFKLGQ 419
>UniRef50_Q015S4 Cluster: Homology to unknown gene; n=2;
Ostreococcus|Rep: Homology to unknown gene -
Ostreococcus tauri
Length = 533
Score = 37.9 bits (84), Expect = 0.34
Identities = 26/76 (34%), Positives = 42/76 (55%)
Frame = -3
Query: 880 GARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSLGN 701
GA LA + N+ LE+LDL+ N IG++ EL+DA+ D + L+R+ + N L
Sbjct: 444 GASDLASDLRENT-SLETLDLTRNTIGKDGANELMDAM----DENKTLTRLAIESN-LIP 497
Query: 700 AANKKSLKDKLGASAE 653
A +K ++G A+
Sbjct: 498 AETTLEMKRRVGLRAQ 513
>UniRef50_Q1JSF8 Cluster: Putative uncharacterized protein; n=1;
Toxoplasma gondii|Rep: Putative uncharacterized protein
- Toxoplasma gondii
Length = 844
Score = 37.9 bits (84), Expect = 0.34
Identities = 23/64 (35%), Positives = 36/64 (56%)
Frame = -3
Query: 886 SRGARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSL 707
++GA +A A N+ L ++DLSHN +G AC LV A+ +S + + + L GNS
Sbjct: 281 NQGAACMADALNRNT-SLVTVDLSHNGVGAAACTLLVQAV---ENSNKTVLHVDLTGNSA 336
Query: 706 GNAA 695
A+
Sbjct: 337 SYAS 340
>UniRef50_Q5ZU50 Cluster: Leucine-rich repeat-containing protein;
n=2; Legionella pneumophila|Rep: Leucine-rich
repeat-containing protein - Legionella pneumophila
subsp. pneumophila (strain Philadelphia 1 /ATCC 33152 /
DSM 7513)
Length = 542
Score = 37.1 bits (82), Expect = 0.60
Identities = 19/59 (32%), Positives = 36/59 (61%)
Frame = -3
Query: 883 RGARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSL 707
+ + LAKAF + + +LDL N++G+++ EL +A +P S ++R++L+ N L
Sbjct: 78 KNGKDLAKAFAKIPISVTTLDLGSNQLGKKSGEELANAFAGIPTS---VTRLILSQNEL 133
Score = 33.5 bits (73), Expect = 7.4
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = -3
Query: 886 SRGARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSL 707
++ LA+ F L + SLDL +NE+G+ EL A ++P S L+ L N L
Sbjct: 309 NKSGEELAEIFAKIPLSVTSLDLRYNELGKRNGKELAIAFAKIPSSVTNLN---LKFNHL 365
Query: 706 GNAANKK 686
G ++
Sbjct: 366 GKITGEE 372
>UniRef50_Q86WI3-4 Cluster: Isoform 4 of Q86WI3 ; n=6; Homo
sapiens|Rep: Isoform 4 of Q86WI3 - Homo sapiens (Human)
Length = 1837
Score = 36.7 bits (81), Expect = 0.79
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = -3
Query: 880 GARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSLGN 701
G L++A + + LE LDLSHN+IG L + LP+ L +I L+GNS+ +
Sbjct: 1565 GCCHLSEALRA-ATSLEELDLSHNQIGDAGVQHLATILPGLPE----LRKIDLSGNSISS 1619
Query: 700 A 698
A
Sbjct: 1620 A 1620
>UniRef50_Q86WI3 Cluster: Protein NLRC5; n=19; Eutheria|Rep: Protein
NLRC5 - Homo sapiens (Human)
Length = 1866
Score = 36.7 bits (81), Expect = 0.79
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = -3
Query: 880 GARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSLGN 701
G L++A + + LE LDLSHN+IG L + LP+ L +I L+GNS+ +
Sbjct: 1594 GCCHLSEALRA-ATSLEELDLSHNQIGDAGVQHLATILPGLPE----LRKIDLSGNSISS 1648
Query: 700 A 698
A
Sbjct: 1649 A 1649
>UniRef50_UPI000069F3F1 Cluster: Erythrocyte membrane protein band
4.2 (Erythrocyte protein 4.2) (P4.2).; n=6; Xenopus
tropicalis|Rep: Erythrocyte membrane protein band 4.2
(Erythrocyte protein 4.2) (P4.2). - Xenopus tropicalis
Length = 699
Score = 36.3 bits (80), Expect = 1.0
Identities = 26/79 (32%), Positives = 44/79 (55%)
Frame = -3
Query: 874 RALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSLGNAA 695
+A+++ KG ++ +++ S + REA + L +TE P E +S ++LAGN + A
Sbjct: 461 KAISRLHKGGAIP--NINESEHIPLREALLLLKFKLTESPQLGETISLVLLAGNMVSTA- 517
Query: 694 NKKSLKDKLGASAELSDGE 638
K+LK L A A DG+
Sbjct: 518 --KTLKLSLSAQAMKHDGK 534
>UniRef50_A0TYA6 Cluster: Putative uncharacterized protein
precursor; n=1; Burkholderia cenocepacia MC0-3|Rep:
Putative uncharacterized protein precursor -
Burkholderia cenocepacia MC0-3
Length = 645
Score = 35.9 bits (79), Expect = 1.4
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -2
Query: 467 KRRHTVRRGALPQGSFRQA--PEFPGRQGCRAHRRSSADDPRSGCYDRGLRSSGSVRQRP 294
+RR R G P+ R A E PGR R HRR R + G + RQRP
Sbjct: 139 RRRRGHRTGQRPRQRARPARRDEGPGRHHGRQHRRRG-QSARRRSHANG-QPGHEPRQRP 196
Query: 293 VVPERGGHRPRQ 258
V R GHR R+
Sbjct: 197 AVAARAGHRRRR 208
>UniRef50_UPI0000E81099 Cluster: PREDICTED: hypothetical protein;
n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
- Gallus gallus
Length = 655
Score = 35.1 bits (77), Expect = 2.4
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -2
Query: 401 PGRQGCRAHRRSSADDPRSGCYDRGLRSSGSVRQRPVVPERGGHRPR 261
P R+G R HR PRS R LR+ G +P RGG P+
Sbjct: 173 PHRRGARLHRPPGPARPRSPSLSRCLRTGGRNEVPGEMPRRGGRSPK 219
>UniRef50_UPI0000E24C81 Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 473
Score = 35.1 bits (77), Expect = 2.4
Identities = 22/57 (38%), Positives = 25/57 (43%)
Frame = -2
Query: 464 RRHTVRRGALPQGSFRQAPEFPGRQGCRAHRRSSADDPRSGCYDRGLRSSGSVRQRP 294
R HT RG + + + R AP FPG R RR R DRG R S R P
Sbjct: 21 RAHTGHRGMMRRQNSRSAPCFPG-ASARGQRRVPGGPGRERAGDRGARRSRLPRHLP 76
>UniRef50_Q2INF4 Cluster: Putative uncharacterized protein; n=1;
Anaeromyxobacter dehalogenans 2CP-C|Rep: Putative
uncharacterized protein - Anaeromyxobacter dehalogenans
(strain 2CP-C)
Length = 781
Score = 35.1 bits (77), Expect = 2.4
Identities = 26/73 (35%), Positives = 30/73 (41%)
Frame = -2
Query: 464 RRHTVRRGALPQGSFRQAPEFPGRQGCRAHRRSSADDPRSGCYDRGLRSSGSVRQRPVVP 285
RRH A P + R A G +G R A PR G RG + VR +
Sbjct: 382 RRHGAHGAARPGDARRPARRGRGARGVRVRGAGEARRPR-GRRGRGRPRAPVVRGAWLPA 440
Query: 284 ERGGHRPRQATLP 246
RGG PRQ LP
Sbjct: 441 GRGGRHPRQHALP 453
>UniRef50_Q2IFN9 Cluster: Putative uncharacterized protein; n=1;
Anaeromyxobacter dehalogenans 2CP-C|Rep: Putative
uncharacterized protein - Anaeromyxobacter dehalogenans
(strain 2CP-C)
Length = 366
Score = 35.1 bits (77), Expect = 2.4
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -2
Query: 401 PGRQGCRAHRRSSADDPRSGCYDRGLRSSGSVRQRPVVPERGGHRPRQATLPAVHSQG 228
PGR+GCR+ R + PR+G R G+ RP P R R R A P + G
Sbjct: 112 PGRRGCRSPRCAGTGSPRAGASPGRSRRRGARGARPPSP-RARPRRRSAARPTRPAPG 168
>UniRef50_Q964V6 Cluster: DeliriumA; n=2; Dictyostelium
discoideum|Rep: DeliriumA - Dictyostelium discoideum
(Slime mold)
Length = 817
Score = 35.1 bits (77), Expect = 2.4
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = -3
Query: 880 GARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSLGN 701
GA+ L +A + NS + L L NEIG E C L D++ + + ++ + L+GN + N
Sbjct: 677 GAKRLGEALRQNST-ITDLQLRGNEIGDEGCRALSDSLKQ----NQSITELNLSGNGITN 731
Query: 700 AANK 689
K
Sbjct: 732 DGAK 735
>UniRef50_A3H4M7 Cluster: GTP pyrophosphokinase; n=9; Vibrio|Rep:
GTP pyrophosphokinase - Vibrio cholerae B33
Length = 472
Score = 34.7 bits (76), Expect = 3.2
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -3
Query: 211 LANSLLPGLGLIKWENKDYKIRWDLPGCYSILANVLDE 98
LAN L G+G +KWE +DY R+ P Y +A L E
Sbjct: 184 LANRL--GIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE 219
>UniRef50_Q8NAJ2 Cluster: Putative uncharacterized protein C9orf106;
n=3; Homo sapiens|Rep: Putative uncharacterized protein
C9orf106 - Homo sapiens (Human)
Length = 232
Score = 34.7 bits (76), Expect = 3.2
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 625 HHRCPPHR*ALLKHRAYLSGSSCWP--HCPSCSLPKLSG*VFPDCRAAR*WHPPAPCTPL 798
+H P HR AL H + + P HCP C +P G D R R H P PC PL
Sbjct: 151 NHVSPAHRQALRGHSLGSALRALMPGRHCPLC-VPCKRG---CDLRGGRGKHGPRPCCPL 206
Query: 799 VR 804
+R
Sbjct: 207 LR 208
>UniRef50_Q993H1 Cluster: ORF39; n=1; Callitrichine herpesvirus
3|Rep: ORF39 - Callitrichine herpesvirus 3 (Marmoset
lymphocryptovirus)
Length = 327
Score = 34.3 bits (75), Expect = 4.2
Identities = 23/59 (38%), Positives = 28/59 (47%)
Frame = -2
Query: 398 GRQGCRAHRRSSADDPRSGCYDRGLRSSGSVRQRPVVPERGGHRPRQATLPAVHSQG*T 222
G +G R R S DD S C+ R S S +P V E+ PRQ + P SQG T
Sbjct: 88 GGRGGRGGRGSPGDDSPSPCHHRDEPPSRSPSPQPTVSEQSQQSPRQQS-PQGTSQGST 145
>UniRef50_A3K4M9 Cluster: T-DNA border endonuclease, VirD2 protein;
n=5; Rhodobacterales|Rep: T-DNA border endonuclease,
VirD2 protein - Sagittula stellata E-37
Length = 973
Score = 34.3 bits (75), Expect = 4.2
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = -3
Query: 490 EISLDDSGREDIQSDVERFLKD--PSVKHLNSLGDRAAELIDA 368
E +D + D + ++ER L D SV HLN LGDR+A L+DA
Sbjct: 514 EAVIDKASTAD-RPEIERKLTDVLASVAHLNPLGDRSAALLDA 555
>UniRef50_A0Z0W1 Cluster: Polyprenyl synthetase; n=1; marine gamma
proteobacterium HTCC2080|Rep: Polyprenyl synthetase -
marine gamma proteobacterium HTCC2080
Length = 280
Score = 34.3 bits (75), Expect = 4.2
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -3
Query: 469 GREDIQSDVERFLKDPSVKHLNSLGDRAAELIDAHLQMIR 350
G E+ Q++ ER L D ++ LN GDRA L+D + M+R
Sbjct: 239 GLEEAQNEAERLL-DEAMTCLNPYGDRAQPLVDLAIAMVR 277
>UniRef50_Q01CE8 Cluster: Homology to unknown gene; n=2;
Ostreococcus|Rep: Homology to unknown gene -
Ostreococcus tauri
Length = 481
Score = 34.3 bits (75), Expect = 4.2
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = -3
Query: 886 SRGARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSL 707
S G AL K G S L +DL+HN G + DA++ + L ++L NS+
Sbjct: 194 SEGMEALGKG-AGTSATLRRIDLAHNGFGDRGVIAFADALSR--GAAPNLRVVLLGFNSI 250
Query: 706 GNAANKKSLKDKLGASAELSD 644
G + ++ +G + E D
Sbjct: 251 GPDGVRALMQALVGTNVEHLD 271
>UniRef50_UPI0000F2EBE8 Cluster: PREDICTED: similar to Ac1147; n=1;
Monodelphis domestica|Rep: PREDICTED: similar to Ac1147
- Monodelphis domestica
Length = 510
Score = 33.9 bits (74), Expect = 5.6
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -2
Query: 368 SSADDPRSGCYDRGLRSSGSVRQRPVVP---ERGGHRPRQATLPA 243
SS R GC G RS GS+R+RP P R G R R +P+
Sbjct: 177 SSGSRRRGGCGPTGRRSVGSLRRRPAPPVPRRRPGRRRRPVRMPS 221
>UniRef50_UPI0000F2D4EF Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 381
Score = 33.9 bits (74), Expect = 5.6
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = -2
Query: 452 VRRGALPQGSFRQAPEFPGRQGCRAHRRSSADDPRSGCYDRGLRSSGSVRQRPVV 288
VRR + QG R A PGR+G R+GC+ GL S+ RQ P V
Sbjct: 300 VRRREVSQG--RAADAEPGRRGRLCFLLGGGSPLRAGCFPLGLVSTHGARQAPTV 352
>UniRef50_UPI000023E6FE Cluster: hypothetical protein FG03939.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG03939.1 - Gibberella zeae PH-1
Length = 293
Score = 33.9 bits (74), Expect = 5.6
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = -3
Query: 487 ISLDDSGREDIQSDVERFLK--DPSVKHLNSLGDRAAELIDAHLQMIRDPDAM 335
I+L D RE D ERFL+ + ++HL+SLG E+ D+++ + D DA+
Sbjct: 184 ITLHDHVREGKPIDAERFLRGVEAGLRHLHSLGYCHNEIDDSNVMLDDDGDAV 236
>UniRef50_Q0EZT1 Cluster: GTP pyrophosphokinase; n=1; Mariprofundus
ferrooxydans PV-1|Rep: GTP pyrophosphokinase -
Mariprofundus ferrooxydans PV-1
Length = 646
Score = 33.9 bits (74), Expect = 5.6
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = -3
Query: 211 LANSLLPGLGLIKWENKDYKIRWDLPGCYSILANVLDEAYFPAGLRDTLRFFITSKLPTL 32
+AN L G+G +KWE +D R+ P Y +AN+L+E G R+T + +++ TL
Sbjct: 104 IANRL--GIGQLKWELEDLSFRYLQPETYKRIANMLEE---KRGGRETYIKQVVTEINTL 158
>UniRef50_A1TL74 Cluster: Putative uncharacterized protein; n=1;
Acidovorax avenae subsp. citrulli AAC00-1|Rep: Putative
uncharacterized protein - Acidovorax avenae subsp.
citrulli (strain AAC00-1)
Length = 208
Score = 33.9 bits (74), Expect = 5.6
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = -2
Query: 464 RRHTVRRGALPQGSFRQA--PEFPGRQGCRAHRRSSADDPRSGCY-DRG--LRSSGSVRQ 300
RR RR + G+ R A P R+G + + S A R G + RG R R
Sbjct: 40 RRLPRRRLQVGAGTGRPARRDRRPRRRGIQRRQGSGAGHARLGAHLGRGQSARLPAGRRH 99
Query: 299 RPVVPERGGHRPRQATLPAV 240
P+ PE G H P QA+ PAV
Sbjct: 100 APLRPEPGTHLPGQASAPAV 119
>UniRef50_Q2QU42 Cluster: Leucine Rich Repeat family protein,
expressed; n=4; Oryza sativa|Rep: Leucine Rich Repeat
family protein, expressed - Oryza sativa subsp. japonica
(Rice)
Length = 985
Score = 33.9 bits (74), Expect = 5.6
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -3
Query: 850 GNSLXLESLDLSHNEIGRE--ACMELVDAITELPDSQERLSRIVLAGNSLGN 701
G LESLDLSHNE+ E + M+ ++A+ + S LS + GN++G+
Sbjct: 832 GQLKQLESLDLSHNELSGEIPSSMQDLNALGTMNLSYNNLSGRIPRGNTMGS 883
>UniRef50_Q9VIW3 Cluster: Ran GTPase-activating protein; n=2;
Sophophora|Rep: Ran GTPase-activating protein -
Drosophila melanogaster (Fruit fly)
Length = 596
Score = 33.9 bits (74), Expect = 5.6
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -3
Query: 886 SRGARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSL 707
+ GA +A + + LE +DL NEI + + LV+A+ P +L + L GNS
Sbjct: 274 TNGAYHFGEALERGNERLEVIDLGFNEINSDGGLVLVNAMGNKP----KLRILNLDGNSF 329
Query: 706 GNAANKKSLKD--KLGASAEL 650
G ++K + + KL +A L
Sbjct: 330 GEEGSEKIISEMSKLPTAAAL 350
>UniRef50_UPI0000EBE777 Cluster: PREDICTED: hypothetical protein;
n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
Bos taurus
Length = 218
Score = 33.5 bits (73), Expect = 7.4
Identities = 35/119 (29%), Positives = 50/119 (42%)
Frame = -2
Query: 434 PQGSFRQAPEFPGRQGCRAHRRSSADDPRSGCYDRGLRSSGSVRQRPVVPERGGHRPRQA 255
P G R P G + R RR++A + G ++GS R E+G P A
Sbjct: 38 PPGVIRGPPNRAGDEPARGGRRAAASPRLAERSAWGAAAAGSPRAFSEAAEQGAQSP-PA 96
Query: 254 TLPAVHSQG*TANGSG*LALTRIRTYQVGEQGL*DKVGPARLLQHPGQRSGRGLLPRRA 78
A + A G LA TR + QG K+G + + PG+R+ +G PR A
Sbjct: 97 RQGAAPRRSLAAPGC--LASTRRAAARKRCQGPGGKIGRSDVPASPGRRASQG-APRAA 152
>UniRef50_Q3JWI9 Cluster: PilL; n=5; Burkholderia|Rep: PilL -
Burkholderia pseudomallei (strain 1710b)
Length = 833
Score = 33.1 bits (72), Expect = 9.7
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = -2
Query: 455 TVRRGALPQGSFRQAPEFPGRQGCRAHRRSSAD----DPRSGCYDRGLRSSGSVRQRPVV 288
T RR P G+ R++ E QGCRA R +A + RS + RG+R +G+ +
Sbjct: 745 TQRRFQRPAGAHRRSAEKLAGQGCRAQREGNAHARLLEARSR-HPRGVRHAGAGARTHPR 803
Query: 287 PERGGHRPRQAT 252
RG + R+ T
Sbjct: 804 AARGTRKARRRT 815
>UniRef50_Q68A46 Cluster: Leucine-rich repeat protein; n=4; Ralstonia
solanacearum|Rep: Leucine-rich repeat protein - Ralstonia
solanacearum (Pseudomonas solanacearum)
Length = 1035
Score = 33.1 bits (72), Expect = 9.7
Identities = 25/59 (42%), Positives = 31/59 (52%)
Frame = -3
Query: 883 RGARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSL 707
R ARALA ++ L SLD+SHN+IG E L D+ L R +RI AG L
Sbjct: 960 RAARALA-----DNPVLASLDISHNDIGPEGAQALADS-ASLTILDARANRIGEAGARL 1012
>UniRef50_A7DBF4 Cluster: Putative uncharacterized protein
precursor; n=2; Methylobacterium extorquens PA1|Rep:
Putative uncharacterized protein precursor -
Methylobacterium extorquens PA1
Length = 558
Score = 33.1 bits (72), Expect = 9.7
Identities = 25/55 (45%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -2
Query: 401 PGRQGCRAHRRSSADDPRSGCYDRGLRSSG-SVRQRPVVPE-RGGHRPRQATLPA 243
P RQ CRA RR + PRS G R SG S +R PE R G RP PA
Sbjct: 47 PPRQ-CRARRRRTRSAPRSSRSAGGRRRSGSSALRRSRAPERRRGCRPEARRSPA 100
>UniRef50_A5NZ82 Cluster: ABC transporter related precursor; n=3;
Proteobacteria|Rep: ABC transporter related precursor -
Methylobacterium sp. 4-46
Length = 244
Score = 33.1 bits (72), Expect = 9.7
Identities = 22/66 (33%), Positives = 26/66 (39%)
Frame = -2
Query: 446 RGALPQGSFRQAPEFPGRQGCRAHRRSSADDPRSGCYDRGLRSSGSVRQRPVVPERGGHR 267
R A P R P +G R H PR+G G +R+RP RGG R
Sbjct: 66 RAAAPLAVHRHGRREPAPRGARGHAAGHGRGPRAG-------PRGGLRRRPAGRRRGGAR 118
Query: 266 PRQATL 249
R A L
Sbjct: 119 RRGAAL 124
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 737,274,524
Number of Sequences: 1657284
Number of extensions: 14397275
Number of successful extensions: 50337
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 47359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50302
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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