Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d02
         (888 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   5.6  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   7.4  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    22   7.4  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 850 GNSLXLESLDLSHNEI 803
           GN   L+ LDLSHN +
Sbjct: 269 GNMPHLQVLDLSHNSL 284


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 317 LSVSLGHSIRISDHLQMSVDELGSP 391
           LS S  H++ I   L  SV  LG P
Sbjct: 55  LSPSSAHTVLIPQPLHPSVPRLGHP 79


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 347 ISDHLQMSVDELGSPVAQGIQVL-DGRILEEALHV 448
           +++H  + V +L   +AQ +QVL   +I++E + V
Sbjct: 12  LANHKNVQVGDLVQKIAQKLQVLFQDQIVDEMVTV 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,031
Number of Sequences: 336
Number of extensions: 3162
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)