Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d02
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    31   0.17 
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    30   0.38 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.2  

>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 790 CMELVDAITELPDSQERLSRIVLAGNSLGNAANKKSL 680
           CM ++   T+L D +ERL R+V+A N  G       L
Sbjct: 562 CMSVLALATDLKDMRERLGRMVVASNKSGEPVTADDL 598


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 790 CMELVDAITELPDSQERLSRIVLAGNSLGNA 698
           CM ++    +L D   RLSR+V+A +  GNA
Sbjct: 594 CMSILALSCDLNDMHSRLSRMVIANDKYGNA 624


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -2

Query: 449 RRGALPQGSFRQAPEFPGRQGCRAHRRSSADDPRSGCYDRGLRSSGSVRQRPVVPERGGH 270
           R G  PQ +  Q P  P R G +  + +    P       GL+   +  Q+P+VP+R G 
Sbjct: 426 RTGMQPQMTGFQQPMIPQRTGMQP-QMTGFQQPMMP-QRTGLQPQMTGFQQPMVPQRTGM 483

Query: 269 RPR 261
           +P+
Sbjct: 484 QPQ 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,681
Number of Sequences: 5004
Number of extensions: 50451
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)