Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d02
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606... 34 0.17
05_06_0263 + 26752759-26754393 31 1.2
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396... 31 1.2
08_02_0033 + 11396633-11396848 30 2.1
04_02_0020 - 8610425-8610710,8610716-8611140,8611393-8611463,861... 30 2.1
04_03_0191 - 12452369-12452499,12452875-12453077,12453641-124538... 30 2.8
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325... 30 2.8
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 29 4.9
09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964 29 6.5
08_01_0888 + 8719416-8719720,8719747-8720482 29 6.5
07_01_1139 - 10684647-10685837,10685877-10686251,10686351-106865... 29 6.5
06_01_0928 - 7159857-7159922,7159923-7160024,7160126-7160206,716... 29 6.5
04_01_0303 + 4132988-4133184,4133701-4134202,4134261-4134638,413... 29 6.5
09_06_0237 + 21788886-21789965 28 8.6
08_02_0016 - 11262103-11262242,11262278-11262892,11263319-112633... 28 8.6
04_01_0179 + 2021977-2024890,2025117-2025610 28 8.6
>12_01_0991 - 10057736-10058249,10058412-10059241,10059266-10060633,
10061785-10062327,10066274-10066498,10066590-10066640
Length = 1176
Score = 33.9 bits (74), Expect = 0.17
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -3
Query: 850 GNSLXLESLDLSHNEIGRE--ACMELVDAITELPDSQERLSRIVLAGNSLGN 701
G LESLDLSHNE+ E + M+ ++A+ + S LS + GN++G+
Sbjct: 1023 GQLKQLESLDLSHNELSGEIPSSMQDLNALGTMNLSYNNLSGRIPRGNTMGS 1074
>05_06_0263 + 26752759-26754393
Length = 544
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = -3
Query: 886 SRGARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQE 743
S G ALA+A G L+ LDL N G EA + L +++LPD E
Sbjct: 313 SDGGVALAEAL-GTCTRLKKLDLRDNLFGVEAGLALSKTLSKLPDLVE 359
>02_05_0246 +
27136590-27138610,27138933-27139056,27139401-27139694,
27139776-27139978,27140307-27140589
Length = 974
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 822 TSATTRSDERRAWSWWMPSP-SCPTVRKDSAG*FWQ 718
++A+T R WS W SP S P VR+D + FW+
Sbjct: 78 STASTPRGASRTWSSWTNSPRSPPKVRRDGSVEFWK 113
>08_02_0033 + 11396633-11396848
Length = 71
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -2
Query: 833 RVSGPQPQRDRTRGVHGAGGCHHRAARQSGKTQPDSFGREQLG 705
R SG P R V G GG HR A + +T GR+QLG
Sbjct: 8 RGSGAAPSRSFLLLVVGGGG-RHRDASERSRTSLPCLGRQQLG 49
>04_02_0020 -
8610425-8610710,8610716-8611140,8611393-8611463,
8611503-8611878
Length = 385
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 718 GNSLGNAANKKSLKDKLGASAELSD 644
GN++GN +N+ SLKD + A A+ +D
Sbjct: 27 GNNIGNFSNQPSLKDVVSAQAKTTD 51
>04_03_0191 -
12452369-12452499,12452875-12453077,12453641-12453835,
12454301-12454809
Length = 345
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 256 AWRGRWPPRSGTTGRWRTEPLERKPR 333
A R RW G GRWR P +PR
Sbjct: 136 ARRARWGKEVGQRGRWRVAPEPERPR 161
>01_01_0429 +
3254291-3254435,3254902-3255210,3255286-3256747,
3256950-3257577
Length = 847
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = -3
Query: 847 NSLX-LESLDLSHNEIGREACMEL--VDAITELPDSQERLSRIVLAGNSLGNAAN 692
NSL LESLDLS N++ E EL + ++ L S L+R + GN G+ +N
Sbjct: 521 NSLTQLESLDLSWNKLSGEIPPELASLTSLAWLNLSYNNLTRRIPQGNQFGSFSN 575
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -3
Query: 835 LESLDLSHNEIGREACMELVDAITE-LPDSQERLSRIVL 722
L +L +++EIG+ A ++L+DA+ E +PD +L + L
Sbjct: 231 LSALQGTNDEIGKNAILKLMDAVDEYIPDPVRQLDKSFL 269
>09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964
Length = 586
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 718 GNSLGNAANKKSLKDKLGASAELSD 644
GN+ GN +N+ SLKD + A AE +D
Sbjct: 306 GNNNGNFSNQPSLKDLVFAQAETTD 330
>08_01_0888 + 8719416-8719720,8719747-8720482
Length = 346
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -3
Query: 721 AGNSLGNAANKKSLKDKLGASAELSD 644
AGN+ GN +N+ SLKD + A A+ +D
Sbjct: 41 AGNNNGNFSNQPSLKDLVFAQAKTTD 66
>07_01_1139 -
10684647-10685837,10685877-10686251,10686351-10686534,
10686699-10686895
Length = 648
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 718 GNSLGNAANKKSLKDKLGASAELSD 644
GN+ GN +NK SLKD + A A+ +D
Sbjct: 211 GNNNGNFSNKPSLKDLVFAQAKTTD 235
>06_01_0928 -
7159857-7159922,7159923-7160024,7160126-7160206,
7160289-7160384,7160462-7160566,7160648-7160722,
7161372-7161431,7161960-7162090,7162175-7162250,
7163390-7163459,7163603-7163664,7163788-7163871,
7163973-7164047,7164448-7164585,7164733-7164791,
7164910-7165123,7167996-7168091,7168701-7169639
Length = 842
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 880 GARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAI 767
GA LA++FK + L SLDL NEI + L A+
Sbjct: 761 GAICLARSFKIINESLTSLDLGFNEIRDDGAFALAQAL 798
>04_01_0303 +
4132988-4133184,4133701-4134202,4134261-4134638,
4134657-4135301
Length = 573
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 724 LAGNSLGNAANKKSLKDKLGASAELSD 644
L GN+ GN +N+ SLKD + A A+ +D
Sbjct: 139 LGGNNNGNFSNQPSLKDLVFAQAKTTD 165
>09_06_0237 + 21788886-21789965
Length = 359
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/71 (29%), Positives = 27/71 (38%)
Frame = +1
Query: 118 GCCSSRAGPTLSYSPCSPT**VLIRVRAS*PEPFAV*PWL*TAGRVAWRGRWPPRSGTTG 297
G + RAGP L + C P +L+ +R A P A R P G G
Sbjct: 97 GSGAMRAGPELGTTTCQP---ILLPIREDMVLVMAYLPQPAGRSNFAVMRRLPDGGGGGG 153
Query: 298 RWRTEPLERKP 330
WR P+ P
Sbjct: 154 GWRVVPVPEPP 164
>08_02_0016 -
11262103-11262242,11262278-11262892,11263319-11263397,
11263466-11263612
Length = 326
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 118 LANVLDEAYFPAGLRDTLRFFITSKLP-TLPTEIELAIKK 2
L V + +F AGL+D L+ + SKLP T+ LA K
Sbjct: 125 LGTVWEVGHFVAGLKDALKTHVLSKLPETISQAYHLAKAK 164
>04_01_0179 + 2021977-2024890,2025117-2025610
Length = 1135
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -3
Query: 835 LESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSLGNA 698
L+ +D+SHN++ + DA L E LSR+VL+GNSL A
Sbjct: 523 LQEIDVSHNQLTGG----VPDAFGRL----EALSRLVLSGNSLSGA 560
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,890,294
Number of Sequences: 37544
Number of extensions: 437876
Number of successful extensions: 1735
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1733
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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