Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d02
         (888 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061219-1|AAL28767.1|  596|Drosophila melanogaster LD16356p pro...    34   0.30 
AF143860-1|AAD31518.1|  596|Drosophila melanogaster RanGAP protein.    34   0.30 
AE014134-3098|AAF53801.1|  596|Drosophila melanogaster CG9999-PA...    34   0.30 
AF160940-1|AAD46880.1| 1260|Drosophila melanogaster BcDNA.LD1916...    29   8.6  
AE014297-55|AAF52146.1| 1260|Drosophila melanogaster CG9776-PA, ...    29   8.6  

>AY061219-1|AAL28767.1|  596|Drosophila melanogaster LD16356p
           protein.
          Length = 596

 Score = 33.9 bits (74), Expect = 0.30
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = -3

Query: 886 SRGARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSL 707
           + GA    +A +  +  LE +DL  NEI  +  + LV+A+   P    +L  + L GNS 
Sbjct: 274 TNGAYHFGEALERGNERLEVIDLGFNEINSDGGLVLVNAMGNKP----KLRILNLDGNSF 329

Query: 706 GNAANKKSLKD--KLGASAEL 650
           G   ++K + +  KL  +A L
Sbjct: 330 GEEGSEKIISEMSKLPTAAAL 350


>AF143860-1|AAD31518.1|  596|Drosophila melanogaster RanGAP protein.
          Length = 596

 Score = 33.9 bits (74), Expect = 0.30
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = -3

Query: 886 SRGARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSL 707
           + GA    +A +  +  LE +DL  NEI  +  + LV+A+   P    +L  + L GNS 
Sbjct: 274 TNGAYHFGEALERGNERLEVIDLGFNEINSDGGLVLVNAMGNKP----KLRILNLDGNSF 329

Query: 706 GNAANKKSLKD--KLGASAEL 650
           G   ++K + +  KL  +A L
Sbjct: 330 GEEGSEKIISEMSKLPTAAAL 350


>AE014134-3098|AAF53801.1|  596|Drosophila melanogaster CG9999-PA
           protein.
          Length = 596

 Score = 33.9 bits (74), Expect = 0.30
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = -3

Query: 886 SRGARALAKAFKGNSLXLESLDLSHNEIGREACMELVDAITELPDSQERLSRIVLAGNSL 707
           + GA    +A +  +  LE +DL  NEI  +  + LV+A+   P    +L  + L GNS 
Sbjct: 274 TNGAYHFGEALERGNERLEVIDLGFNEINSDGGLVLVNAMGNKP----KLRILNLDGNSF 329

Query: 706 GNAANKKSLKD--KLGASAEL 650
           G   ++K + +  KL  +A L
Sbjct: 330 GEEGSEKIISEMSKLPTAAAL 350


>AF160940-1|AAD46880.1| 1260|Drosophila melanogaster BcDNA.LD19168
           protein.
          Length = 1260

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -2

Query: 467 KRRHTVRRGALPQGSFRQAPEFPGRQGCRAHRRSSADDP-RSGCYDRGLRSSGSVRQRPV 291
           +RRH++ R   P      +P++ GR   R   R     P R     R  R  G  R R +
Sbjct: 75  RRRHSLSRSLTPPRRRYDSPDY-GRYSRRRFDRDRRRSPERRRSPPRRGRRYGRSRSRSM 133

Query: 290 VPERGG 273
            P RGG
Sbjct: 134 SPRRGG 139


>AE014297-55|AAF52146.1| 1260|Drosophila melanogaster CG9776-PA,
           isoform A protein.
          Length = 1260

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -2

Query: 467 KRRHTVRRGALPQGSFRQAPEFPGRQGCRAHRRSSADDP-RSGCYDRGLRSSGSVRQRPV 291
           +RRH++ R   P      +P++ GR   R   R     P R     R  R  G  R R +
Sbjct: 75  RRRHSLSRSLTPPRRRYDSPDY-GRYSRRRFDRDRRRSPERRRSPPRRGRRYGRSRSRSM 133

Query: 290 VPERGG 273
            P RGG
Sbjct: 134 SPRRGG 139


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,994,073
Number of Sequences: 53049
Number of extensions: 666332
Number of successful extensions: 1966
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1962
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4332305172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)