Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d02
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    32   0.48 
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    32   0.48 
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    32   0.48 
AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical ...    29   4.4  
U41552-2|AAC69104.1|  640|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U41552-1|AAC69101.2|  640|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical
           protein F15D3.1a protein.
          Length = 3674

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 769 ITELPDSQERLSRIVLAGNSLGNAANKKSLKDKLGASAEL 650
           ++ L DSQ+ + R++L G  L N +  +  K+ +GA+  L
Sbjct: 375 MSSLTDSQDTVGRVLLRGQMLSNKSESEEEKESIGANLHL 414


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical
           protein F15D3.1a protein.
          Length = 3674

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 769 ITELPDSQERLSRIVLAGNSLGNAANKKSLKDKLGASAEL 650
           ++ L DSQ+ + R++L G  L N +  +  K+ +GA+  L
Sbjct: 375 MSSLTDSQDTVGRVLLRGQMLSNKSESEEEKESIGANLHL 414


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
           protein.
          Length = 3674

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 769 ITELPDSQERLSRIVLAGNSLGNAANKKSLKDKLGASAEL 650
           ++ L DSQ+ + R++L G  L N +  +  K+ +GA+  L
Sbjct: 375 MSSLTDSQDTVGRVLLRGQMLSNKSESEEEKESIGANLHL 414


>AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical
           protein Y43F8A.2 protein.
          Length = 502

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 754 DSQERLSRIVLAGNSLGNAANKKSLKDKLG 665
           D  E L +  +AGN LGN   K ++ DK+G
Sbjct: 284 DLLEFLKKSTVAGNKLGNIVQKCAMYDKIG 313


>U41552-2|AAC69104.1|  640|Caenorhabditis elegans Hypothetical
           protein K07E3.4a protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 787 MELVDAITELPDSQERLSRIVLAGNSLGN 701
           M ++   T L D QER++RIV+  +  GN
Sbjct: 273 MAILALTTSLADMQERIARIVIGSDKAGN 301


>U41552-1|AAC69101.2|  640|Caenorhabditis elegans Hypothetical
           protein K07E3.4b protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 787 MELVDAITELPDSQERLSRIVLAGNSLGN 701
           M ++   T L D QER++RIV+  +  GN
Sbjct: 273 MAILALTTSLADMQERIARIVIGSDKAGN 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,148,923
Number of Sequences: 27780
Number of extensions: 311085
Number of successful extensions: 1023
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)