Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12d02
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 138 CPAATASWPTFWTRPTSPPGSET 70
           C     SW +FW +P + P   T
Sbjct: 256 CLIVIMSWVSFWIKPEAAPARVT 278


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 454 QSDVERFLKDPSVKHLNSLGDRAAELIDAHL-QMIRDPDAMTEAY 323
           +SD+  FL  PSV +L+ L  R+  L D  L    RD   M+E +
Sbjct: 305 ESDLVTFLCYPSVMNLDDLTRRSLYLSDIPLHDATRDLVLMSEQF 349


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 454 QSDVERFLKDPSVKHLNSLGDRAAELIDAHL-QMIRDPDAMTEAY 323
           +SD+  FL  PSV +L+ L  R+  L D  L    RD   M+E +
Sbjct: 305 ESDLVTFLCYPSVMNLDDLTRRSLYLSDIPLHDATRDLVLMSEQF 349


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 378 SSAALSPREFRCLTEGS 428
           SSAA  P  FRCL E +
Sbjct: 362 SSAATLPITFRCLEENN 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,094
Number of Sequences: 438
Number of extensions: 4136
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)