Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12d01
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 204 1e-53
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 31 0.13
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 31 0.22
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 2.7
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 3.6
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 4.7
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 6.3
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 8.3
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 204 bits (497), Expect = 1e-53
Identities = 99/185 (53%), Positives = 135/185 (72%), Gaps = 2/185 (1%)
Frame = -3
Query: 559 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 386
KI+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 385 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 206
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 205 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 26
++AILED+VFP EI+GKR R DG + IKV LD T+++K+ +F SVY KLTG+ V
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNV 183
Query: 25 TFEFP 11
TFEFP
Sbjct: 184 TFEFP 188
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 31.5 bits (68), Expect = 0.13
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = -3
Query: 223 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYK 47
++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F Q+V
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621
Query: 46 KLTGREVTFEFP 11
+ T +F+ P
Sbjct: 622 QSTKSTASFQLP 633
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 30.7 bits (66), Expect = 0.22
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -3
Query: 310 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 131
H V V D+ + P N+Q R +L+ + D + + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 130 SQLIKVHLD-KNQQTTIEHKV 71
S ++ LD K+ Q EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +3
Query: 267 LGLGRILRSPTKTTCLPLNFFSSSRTS 347
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = -3
Query: 397 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 305
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 239 KEATLKDIDLCVRCYPRGLGLPC 171
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.8 bits (54), Expect = 6.3
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 8/172 (4%)
Frame = -3
Query: 499 LVELETN--SDLKAQLRELYIT-KAKEIELHNKKSII--IYVPMPKLKAFQKIQIRLVRE 335
L+E+E+ S L ++ L + K E E++N + I + +L+ + + I +
Sbjct: 875 LIEIESAKFSGLNKEIDSLSTSMKTFESEINNGELTIQKLNHEFDRLEREKSVAITAINH 934
Query: 334 LEKK---FSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEI 164
LEK+ G+ F I S R +Q S+ AI ++ +
Sbjct: 935 LEKENDWIDGQKQHFGKQGTIFDFHSQNMRQCREQLHNLKPRFASMRKAINPKVMDMIDG 994
Query: 163 VGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 8
V K+ KL S + +H DK + +D F+ + T REV F E
Sbjct: 995 VEKK-EAKLR-SMIKTIHRDKKKIQDTVKSIDRFKRSALEKTWREVNSSFGE 1044
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 584 LLHWNDEYEDHQSERC*GGFLRDLDLAGA 498
+ +WND Y + ++ER FL+DL++ A
Sbjct: 998 ICNWNDSYGEFETER--RYFLQDLEIEDA 1024
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,216
Number of Sequences: 5004
Number of extensions: 56552
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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