Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c23
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224... 33 0.27
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 32 0.48
05_06_0122 - 25775652-25775936,25776027-25776103,25776177-257762... 30 1.9
03_02_0488 - 8824980-8825267,8825364-8827775 29 3.4
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 29 4.5
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 4.5
08_02_0311 - 15635165-15635590,15635777-15638698 29 5.9
05_01_0570 + 5061600-5062142,5062790-5062972 29 5.9
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 28 7.8
02_05_0781 + 31715100-31715672 28 7.8
>02_03_0093 -
15120951-15121344,15121658-15121953,15122119-15122419,
15123233-15123628,15123883-15124067
Length = 523
Score = 33.1 bits (72), Expect = 0.27
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -1
Query: 621 HPLNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPR--GRPTDGSSRR*STTN- 451
HP + P L TS+ +PG PV++ G+ + +T R PPR G P S R S++
Sbjct: 405 HP--EGPKLHAITSESQPGQAPVRTGGMRLMTSTGRDNQPPRSSGVPPSPSEWRSSSSRW 462
Query: 450 DVG 442
D+G
Sbjct: 463 DLG 465
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 32.3 bits (70), Expect = 0.48
Identities = 28/81 (34%), Positives = 33/81 (40%)
Frame = -3
Query: 721 SRLSETRSGHSIGPEVRLLRGVESRSRAQGF*GPPTKRLPCTLTPDVRSPSGVRTRSE*G 542
+R T S P + L SR PP + TLTP RSPS R
Sbjct: 117 TRTRSTNSSSRCSPPLSLQSSTPSRRSPT----PPGNK---TLTPPRRSPSPASRRMS-A 168
Query: 541 GSRGQHYNQTRGATPRTPDRR 479
S G N TRGA+P +RR
Sbjct: 169 TSSGPTLNGTRGASPVKTNRR 189
>05_06_0122 -
25775652-25775936,25776027-25776103,25776177-25776281,
25776353-25776542,25776617-25776804,25776882-25777191
Length = 384
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Frame = -2
Query: 518 PDTRRHPEDARP-TGRRGDSRRPTTSVSAVRRPYQAARAVPLVFRDTPLGQNQPAGSERD 342
P HP D +P T S P T Q+A A ++ P G AG +
Sbjct: 11 PSVEDHPSDNQPATDNVEPSNEPPTG-------NQSAEAEVGANQEPPTGNQSDAGPSQK 63
Query: 341 TPPTGLLFNSMFGDDSDDEN 282
P NS G D+D E+
Sbjct: 64 VPEVEAQTNSPLGKDADSES 83
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 531 PREPPYSERVLTPDGDRTSGVRVQGSRLVGGP*NPWAR--DLLSTPRSSLTSGPIE 692
PR+P S V +GD++SG + GSR +P R D + PR S TSGPI+
Sbjct: 436 PRQPEASTSVDKINGDKSSGNK--GSRR-----SPLRRMLDPILKPRQSSTSGPIQ 484
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 561 EPVQSRGVPAVNTTTRHAAPPRGRPTDGSSRR*STTNDVG 442
E + +RG T +HA PPRG P G + D G
Sbjct: 119 EKMMTRGRAETETARKHAPPPRGLPLLGEALTPQRKADAG 158
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 580 RSPSGVRTRSE*GGSRGQHYNQTRGATPR 494
+ PS +R+R GSRG+ Y+Q +PR
Sbjct: 122 KKPSEMRSRDRISGSRGRSYDQRYSRSPR 150
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 714 FQRPVLGILLARRSGYCAVLRADRGPKDFRAHPLNDSPALLH 589
F + L+ RR G + A +F+A PL D PA+LH
Sbjct: 756 FDAELTSHLVPRRFGNSSPFMASIPVAEFQARPLADHPAVLH 797
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 548 VGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTS 444
VGG ++ RR P TG G +RRPT++
Sbjct: 159 VGGARGRAVRGSARRRPRKEETTGINGTARRPTST 193
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 54 VSSKKTFGAVPPPSGRGSEEGVCPAPAPMRRQSPP 158
+SS + GA P P+ + + PAPA + Q+PP
Sbjct: 577 LSSSSSSGAAPAPA-QAKSQAPPPAPAQAKSQAPP 610
>02_05_0781 + 31715100-31715672
Length = 190
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 555 VQSRGVPAVNTTTRHAAPPRGRPTDGSSRR*STT 454
V + P RHAA P RP+ +SRR STT
Sbjct: 51 VSAAAQPQRAAKKRHAAAPPPRPSASTSRRSSTT 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,120,376
Number of Sequences: 37544
Number of extensions: 579813
Number of successful extensions: 2461
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2458
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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