Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c23
         (822 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045250-1|AAC02700.1|  259|Anopheles gambiae serine proteinase ...    25   2.1  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   2.8  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    24   6.5  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    23   8.6  

>AF045250-1|AAC02700.1|  259|Anopheles gambiae serine proteinase
           protein.
          Length = 259

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 493 SSGWRRVSGCSVDRGNPPTL 552
           + G++ V+GC+ D G P T+
Sbjct: 196 AGGYKNVTGCTADSGGPLTV 215


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 99   RGSEEGVCPAPAPMRRQSPP 158
            R  E G  P P PMRR+  P
Sbjct: 1108 RAEEAGEAPPPIPMRRRGLP 1127


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 375 QRGIPEHQRHRPGGLVGPPYRGDRRRWSSTIASTTR 482
           +RG P+ +   P  +  PP     R  + T  +TTR
Sbjct: 551 KRGAPKRKATSPPAVATPPSTSRARTATRTATTTTR 586


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 214 TLARWHQEDGTARRRLRTAMR 276
           T + W + DGT R R+R   R
Sbjct: 239 TTSLWERRDGTQRARVRLPRR 259


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 828,086
Number of Sequences: 2352
Number of extensions: 17068
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 87318630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)