Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c23
         (822 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001351-1|AAN71106.1|  758|Drosophila melanogaster AT25963p pro...    30   3.3  
BT001254-1|AAN71010.1|  758|Drosophila melanogaster AT01057p pro...    30   3.3  
AY069522-1|AAL39667.1|  551|Drosophila melanogaster LD23843p pro...    30   3.3  
AE014297-3441|AAN13975.2|  758|Drosophila melanogaster CG5977-PB...    30   3.3  
AE014297-3440|AAF56223.3|  758|Drosophila melanogaster CG5977-PA...    30   3.3  
AL031028-1|CAA19845.2| 1795|Drosophila melanogaster EG:56G7.1 pr...    29   7.7  
AE014298-231|AAF45644.1| 1795|Drosophila melanogaster CG14796-PA...    29   7.7  

>BT001351-1|AAN71106.1|  758|Drosophila melanogaster AT25963p
           protein.
          Length = 758

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 437 AVRRPYQAARAVPLVFRDTPLGQNQPAGSERDTP 336
           AVRR + + R  P     TP+  N P+GS   TP
Sbjct: 421 AVRRQFSSGRNTPPQRSRTPINNNGPSGSGASTP 454


>BT001254-1|AAN71010.1|  758|Drosophila melanogaster AT01057p
           protein.
          Length = 758

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 437 AVRRPYQAARAVPLVFRDTPLGQNQPAGSERDTP 336
           AVRR + + R  P     TP+  N P+GS   TP
Sbjct: 421 AVRRQFSSGRNTPPQRSRTPINNNGPSGSGASTP 454


>AY069522-1|AAL39667.1|  551|Drosophila melanogaster LD23843p
           protein.
          Length = 551

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 437 AVRRPYQAARAVPLVFRDTPLGQNQPAGSERDTP 336
           AVRR + + R  P     TP+  N P+GS   TP
Sbjct: 214 AVRRQFSSGRNTPPQRSRTPINNNGPSGSGASTP 247


>AE014297-3441|AAN13975.2|  758|Drosophila melanogaster CG5977-PB,
           isoform B protein.
          Length = 758

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 437 AVRRPYQAARAVPLVFRDTPLGQNQPAGSERDTP 336
           AVRR + + R  P     TP+  N P+GS   TP
Sbjct: 421 AVRRQFSSGRNTPPQRSRTPINNNGPSGSGASTP 454


>AE014297-3440|AAF56223.3|  758|Drosophila melanogaster CG5977-PA,
           isoform A protein.
          Length = 758

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 437 AVRRPYQAARAVPLVFRDTPLGQNQPAGSERDTP 336
           AVRR + + R  P     TP+  N P+GS   TP
Sbjct: 421 AVRRQFSSGRNTPPQRSRTPINNNGPSGSGASTP 454


>AL031028-1|CAA19845.2| 1795|Drosophila melanogaster EG:56G7.1
            protein.
          Length = 1795

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = -2

Query: 518  PDTRRHPEDARPTGRRGDSRRPTTSVSAVRRPYQAARAVPLVFRDTPLGQNQPAGSE-RD 342
            P +R H    RP+ +   S+R      A    +  A + P +     L   Q A ++ R 
Sbjct: 1195 PPSREHAPTQRPSSQPSSSQRSRGVTIAQMARHNLATSKPFIAHSLRLSIQQLASTQKRS 1254

Query: 341  TPPTGLLFNSMFGDDSDDE 285
             PP  L+ ++   +  D E
Sbjct: 1255 IPPKTLVTHNTTKEPEDSE 1273


>AE014298-231|AAF45644.1| 1795|Drosophila melanogaster CG14796-PA
            protein.
          Length = 1795

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = -2

Query: 518  PDTRRHPEDARPTGRRGDSRRPTTSVSAVRRPYQAARAVPLVFRDTPLGQNQPAGSE-RD 342
            P +R H    RP+ +   S+R      A    +  A + P +     L   Q A ++ R 
Sbjct: 1195 PPSREHAPTQRPSSQPSSSQRSRGVTIAQMARHNLATSKPFIAHSLRLSIQQLASTQKRS 1254

Query: 341  TPPTGLLFNSMFGDDSDDE 285
             PP  L+ ++   +  D E
Sbjct: 1255 IPPKTLVTHNTTKEPEDSE 1273


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,881,070
Number of Sequences: 53049
Number of extensions: 879194
Number of successful extensions: 3682
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3675
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3880595628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)