Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c23
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97194-6|AAB52451.2|  244|Caenorhabditis elegans Hypothetical pr...    70   2e-12
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    32   0.57 
U39999-13|AAA81111.1|  320|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    29   5.3  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    29   5.3  
AF016424-7|AAB65329.3|  520|Caenorhabditis elegans Hypothetical ...    28   7.0  
U40801-5|AAO91727.1|  777|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U40801-4|AAO91728.1|  873|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AF068720-3|AAC17786.1|  332|Caenorhabditis elegans Seven tm rece...    28   9.3  

>U97194-6|AAB52451.2|  244|Caenorhabditis elegans Hypothetical
           protein C37A2.6 protein.
          Length = 244

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 29/54 (53%), Positives = 36/54 (66%)
 Frame = -2

Query: 821 IIRHTALSRRHLTPELVLRLITPECPLWRAKEDESPFRDPFWAFYWPGGQATAR 660
           +IR+T +S   LTPE+ L LIT   PLW +  D  P  DP+WAFYWPGGQ  +R
Sbjct: 13  MIRNTIVSNESLTPEINLHLITIASPLWMSTPDACPLPDPYWAFYWPGGQGLSR 66


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 270 RSPQPPTRRPVLLVPAR*SDGSVRRSLNPLRSPRDHHREETAS 142
           RSP PP RR +   P R S    RR ++  RSP    ++ + S
Sbjct: 113 RSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQRSRS 155


>U39999-13|AAA81111.1|  320|Caenorhabditis elegans Hypothetical
           protein F41G3.2 protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = -2

Query: 545 GGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVRRPYQAARAVPLVFRDTPLGQN 366
           G  PR+  +P + + P+      + G  R+P T    VR         PL+ R TP+G+N
Sbjct: 160 GSMPRAQRKPGSYQ-PQMHDHRSQDGGYRQPQTETFFVRHQ-------PLLRRRTPVGRN 211

Query: 365 QPAGSERDTP 336
           Q   S R  P
Sbjct: 212 QLRHSRRSRP 221


>Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 72  FGAVPPPSGRGSEEGVCPAPAPMRR 146
           FG  PP +G G E+  C  P P  R
Sbjct: 379 FGGAPPSAGGGCEDADCGGPCPGAR 403


>Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 72  FGAVPPPSGRGSEEGVCPAPAPMRR 146
           FG  PP +G G E+  C  P P  R
Sbjct: 379 FGGAPPSAGGGCEDADCGGPCPGAR 403


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/55 (34%), Positives = 22/55 (40%)
 Frame = -1

Query: 618 PLNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRGRPTDGSSRR*STT 454
           PL  + A L P+   R    PV         TTTR       RPT   +RR  TT
Sbjct: 326 PLATTRAPLPPSPPPRTSKRPVTQAPTTPRATTTRRPTTTTPRPTPRRTRRPKTT 380


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 491 ARPTGRRGDSRRPTTSVSAV-RRPYQAARAVPLVFRDTPLGQNQPAGSERDTPPT 330
           A P   R     PTTS S++ RRP  A+ +VP V    P G      S R  PP+
Sbjct: 364 AAPGAPRSRIAMPTTSSSSLARRPGSASSSVPRV----PTGAASMTSSSRIRPPS 414


>AF016424-7|AAB65329.3|  520|Caenorhabditis elegans Hypothetical
           protein F39G3.3 protein.
          Length = 520

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -1

Query: 711 QRPVLGILLARRSGYCAVLRADRGPKDFRAHPLNDSPALLHPTSDL-RPGSEPVQSRG 541
           Q P L  ++   S YC  +  D G  + R+H    SP      S + R G  P++  G
Sbjct: 6   QMPKLVFIIIIESVYCTYMSRDSGRTNNRSHQGRRSPVRQTGRSPVRRQGKSPIRRHG 63


>U40801-5|AAO91727.1|  777|Caenorhabditis elegans Hypothetical
           protein F28E10.1b protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 605 PLHSYTRRPISVRGQNPFRVGGFPRSTLQPDTRRHPEDAR 486
           P+ S +R+P+S   ++ F +GG  RST   + R+ PE  R
Sbjct: 524 PITSPSRKPVSPEPRHLFVMGG-RRSTTPQEDRKVPEPPR 562


>U40801-4|AAO91728.1|  873|Caenorhabditis elegans Hypothetical
           protein F28E10.1c protein.
          Length = 873

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 605 PLHSYTRRPISVRGQNPFRVGGFPRSTLQPDTRRHPEDAR 486
           P+ S +R+P+S   ++ F +GG  RST   + R+ PE  R
Sbjct: 620 PITSPSRKPVSPEPRHLFVMGG-RRSTTPQEDRKVPEPPR 658


>U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical
           protein F28E10.1a protein.
          Length = 1134

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 605 PLHSYTRRPISVRGQNPFRVGGFPRSTLQPDTRRHPEDAR 486
           P+ S +R+P+S   ++ F +GG  RST   + R+ PE  R
Sbjct: 666 PITSPSRKPVSPEPRHLFVMGG-RRSTTPQEDRKVPEPPR 704


>AF068720-3|AAC17786.1|  332|Caenorhabditis elegans Seven tm
           receptor protein 243 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 802 YPDDT*LPSWFCVSSHRNVRYGGLKKTSRLSETRS 698
           YP    LP+ F + S+R   +G  +KT+R+  +R+
Sbjct: 293 YPALDPLPTMFVIKSYREAIFGCCRKTTRVHASRT 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,043,885
Number of Sequences: 27780
Number of extensions: 405222
Number of successful extensions: 1348
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)