Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c22
(838 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0213 - 15912048-15912716 31 1.1
07_03_0377 + 17442942-17443529,17443616-17444158 31 1.1
04_04_1413 - 33386049-33386339 31 1.1
07_03_0081 - 13203140-13203822,13204979-13205045 30 2.0
04_01_0333 - 4391571-4392289,4393048-4393159 30 2.6
01_06_0924 - 33058194-33058697,33058798-33060147,33060234-330603... 29 3.5
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 29 4.6
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557... 29 6.1
10_08_0218 - 15967064-15967906 28 8.0
09_06_0090 + 20787453-20787507,20787600-20788296,20788949-20789189 28 8.0
02_02_0582 - 11798252-11798908 28 8.0
>10_08_0213 - 15912048-15912716
Length = 222
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 148 HGRWSGNGWSGNVCSGNGW-SGRFYGCSGNGWSGRF 252
HG G G G SG+G+ SGR YG G + G +
Sbjct: 152 HGGGGGGGQGGGYGSGSGYGSGRGYGQGGGAYGGGY 187
>07_03_0377 + 17442942-17443529,17443616-17444158
Length = 376
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 369 RPVWYTKLSWARCTPAWARYMCCQNRTRCGCRTETMDVEMA 491
RP W K SW + Y C+ R CG T V +A
Sbjct: 332 RPYWIIKNSWGKAWGEQGYYRLCRGRNVCGVDTMVSAVAVA 372
>04_04_1413 - 33386049-33386339
Length = 96
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 151 GRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 246
G G G G C G G G GC G G SG
Sbjct: 62 GGGGGGGGGGGGCGGGGGGGGGGGCGGGGGSG 93
>07_03_0081 - 13203140-13203822,13204979-13205045
Length = 249
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 157 WSGNGWSGNVCSGNGWSGRFYGCSGNGWSGR 249
WSGN W+ +CS + SGRF SG+ +GR
Sbjct: 74 WSGNIWARRLCSTDA-SGRFSCESGDCGTGR 103
>04_01_0333 - 4391571-4392289,4393048-4393159
Length = 276
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 124 TLQLFAKTHGRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 246
T L A + G WSG W+ C+ + +GRF + + SG
Sbjct: 82 TYHLAAPSSGTWSGTFWARTGCAVDSSTGRFTCATADCGSG 122
>01_06_0924 -
33058194-33058697,33058798-33060147,33060234-33060303,
33060918-33060976
Length = 660
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 157 WSGNGWSGNVCSGNGWSGRFYGCSGNGW 240
W+G G G G G +G GCSG W
Sbjct: 211 WNGIGSGGTPRGGGGAAGAAAGCSGMDW 238
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 294 VWAKTLACAD**FLRPATEAGTLCTRPVWYTKLSWARCTPAWARY 428
VWA++L D R T AG P+W ++ W+ +P A Y
Sbjct: 1835 VWARSLCVDDLVLRRVQTRAGLSKLSPMWEGRIEWS-ASPGRAPY 1878
>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
5579676-5579795,5581616-5581744,5581828-5581953,
5582945-5583000,5583084-5583183,5585155-5585272,
5585374-5585583,5585902-5586226,5587094-5587187,
5588021-5588129,5588246-5588514,5589153-5589280,
5589983-5590217,5590858-5591046,5591326-5591609,
5591698-5591890,5592040-5592207,5592429-5592514,
5594391-5594550
Length = 1412
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 813 IMGVLTILAVQC-WNLYVQLKEMRRNIYIKRRAEAEKASYDHYC 685
I +L++LA C W+ K+ RR I R E K+ YDH C
Sbjct: 1000 IHSILSVLAYPCAWSW----KQWRRRKKIHRLQEYVKSEYDHSC 1039
>10_08_0218 - 15967064-15967906
Length = 280
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 136 FAKTHGRWSGNGWSGNVCSGNGW---SGRFYGCSGNGWSGRF 252
+A G SG G G G+GW SG YG +G G +
Sbjct: 28 YASAEGGGSGGGGGGGSEDGSGWGSGSGSGYGQAGGSSGGAY 69
>09_06_0090 + 20787453-20787507,20787600-20788296,20788949-20789189
Length = 330
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 157 WSGNGWSGNVCSGN-GWSGRFYGCSGNGWSG 246
WSG W +C + G SGRF +G+ SG
Sbjct: 69 WSGRVWGRTLCGADPGGSGRFACATGDCGSG 99
>02_02_0582 - 11798252-11798908
Length = 218
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 151 GRWSGNGWSGNVCSGNGWSGRFYGCSGNG 237
G +G G +GN G G SG G SG+G
Sbjct: 167 GGGNGVGRAGNAVGGGGGSGSVIGSSGSG 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,493,291
Number of Sequences: 37544
Number of extensions: 300698
Number of successful extensions: 1268
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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