Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c21
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    33   0.072
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    28   2.0  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   2.7  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    27   3.6  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   4.7  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   4.7  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    27   4.7  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    27   4.7  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   6.2  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   6.2  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   8.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.2  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 532 TARLRTPSVQECRASPADFGFPTLEP*NVPKATLASFLAFNTETFTNTTIYLATF 368
           T  + T +++   AS    G PT  P N P  T  +     T T+T  T + +TF
Sbjct: 817 TTEIITSTIEPTTASGTGGGNPTAAPTNEPTVTTGTETTEGTATYTEPTTFTSTF 871


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +1

Query: 415 MLKNWPKLLLARFMVPKSENQNPQGLPCTLGPMVYVVLPLAGSN 546
           +LK  P  LLA+ ++ K E++N    P  + P +Y+++ +A S+
Sbjct: 549 LLKMVPMELLAKILLEKLESKN----PILIEPSIYILVHIAASD 588


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 499 TLGPMVYVVLPLAGSNTTIFLSGSGY 576
           T+   V VVLP AG+NT   +SGS +
Sbjct: 290 TVSGTVEVVLPTAGTNTMTVVSGSRF 315



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 499 TLGPMVYVVLPLAGSNTTIFLSGSGY 576
           T+   V VVLP AG+NT   +SGS +
Sbjct: 430 TVSGTVEVVLPTAGTNTMTVVSGSRF 455


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 425 FFSIQYGDIHKHNNIFGNILQRHLQSDFPLKMEPNVCIHLPDKNKTSE 282
           FFS +   +HK    F  +L+RHL  D   K   ++C   P K  T++
Sbjct: 203 FFSYKVTTVHKSYQRFATLLRRHL-LDKTAKRYHDLCEKRPYKYITTD 249


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 544 NTTIFLSGSGYNLSSHSCKLFKLASRQNSF 633
           NT ++ +G G ++ +H  +LFK   R   F
Sbjct: 290 NTHLYANGEGQHIKNHLLELFKKLHRTQDF 319


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 514 VYVVLPLAGSNTTIFLSGSGYNLSS 588
           V VV+P AG  TT   SGS Y +S+
Sbjct: 173 VEVVIPTAGYITTTLTSGSSYPVST 197


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 514 VYVVLPLAGSNTTIFLSGSGYNLSS 588
           V VV+P AG+ TT   SGS Y +++
Sbjct: 130 VEVVIPTAGTFTTTLTSGSSYPVAT 154


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = -2

Query: 260 FYIINRDNNGSIYATGKIRNVPLDMQRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGV 81
           +Y    DN+  +Y    +  +P  + R S     RL+   K+  P  E+K+Y+   +  +
Sbjct: 91  YYYTTGDNSDEVYLNLVLEFMPETIYRAS-----RLYTRQKLSMPMLEVKLYIYQLLRSL 145

Query: 80  KY 75
            Y
Sbjct: 146 AY 147


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 291 FVLIRQMNAHVWFHFQRKIALQVSLQ-NVAKYIVVF 395
           FVL+RQM  +   H QR   L +++Q  +  YI +F
Sbjct: 318 FVLLRQMRINSPSHVQRLSFLTIAMQAGLDAYIAIF 353


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 492 QALRILVFRLWNHKTCQKQLWP 427
           Q L IL+ +LWNHK  +  + P
Sbjct: 219 QRLAILIRKLWNHKAFKSHVSP 240


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
 Frame = -2

Query: 806 FNVKHDETGVMCYFTP--SSVQLE----PRELTKMLWQ-EQMAINVKRGNFSILNCSCFE 648
           F + H+   +  +F+   S +Q E     R L  +L   EQ++  V +  FS  N     
Sbjct: 354 FLINHEHMRLRVFFSSCCSKIQSEIYSTNRNLLSVLQTVEQISKEVDKEYFSSTNHQLIR 413

Query: 647 GRFLKNEFCRLANLNSLHEW 588
                 E+C+  ++NS  EW
Sbjct: 414 SEI--GEYCKTLDINSCREW 431


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 577  NLSSHSCKLFKLASRQNSFFKNLPSKQLQFSIEK 678
            N   + C+   +   +NSFFKNL S    +SI K
Sbjct: 1202 NTVKYLCEYDSIDKVRNSFFKNLNSFYEMYSIAK 1235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,850,472
Number of Sequences: 5004
Number of extensions: 86412
Number of successful extensions: 280
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)