Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c21
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 29 4.9
12_02_0878 + 23952594-23952802,23954846-23955083,23955122-239552... 29 6.5
10_06_0167 + 11401984-11402023,11402024-11402293,11402499-114026... 29 6.5
03_05_0429 - 24157060-24157671,24158000-24158468,24158679-241587... 29 6.5
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419... 28 8.6
08_01_1068 + 10899965-10900129,10900408-10900562,10900688-109009... 28 8.6
07_03_0454 + 18364654-18366594 28 8.6
01_05_0189 + 19075411-19075497,19075603-19075682,19076707-190768... 28 8.6
>06_01_0510 +
3681369-3681645,3682825-3682886,3683016-3683165,
3683776-3683952,3684496-3684711,3684802-3686480,
3686602-3686667,3686753-3686822,3686909-3687547
Length = 1111
Score = 29.1 bits (62), Expect = 4.9
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Frame = -2
Query: 647 GRFLKNEFCRLANLNSLHEWEDKLYPEPD--KNIVVLEPANG---KTTYTIGPRVQGKP- 486
GR L + + L W LY D + +LE A G K ++IGP +Q KP
Sbjct: 342 GRILSRSHSIALSSSCLSTWHHLLYKLGDLINQLPILEAAFGPVLKIVFSIGPDIQNKPL 401
Query: 485 ---CGFWFSDFGTIK-RAKSNFGQFFSI 414
C F ++ + K R ++ G++ I
Sbjct: 402 YSFCVNLFHEYISTKVRDMASHGEYLPI 429
>12_02_0878 +
23952594-23952802,23954846-23955083,23955122-23955238,
23955719-23955818,23956168-23956196,23956477-23956704
Length = 306
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 380 FGNILQRHLQSDFPLKMEPNVCIHLPDK 297
FG ++ L+++ LK+EP + + L DK
Sbjct: 260 FGQVVSEDLENEIKLKIEPELAVELYDK 287
>10_06_0167 +
11401984-11402023,11402024-11402293,11402499-11402632,
11402737-11403663
Length = 456
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 389 NNIFGNILQRHLQSDFPLKMEPNVCIHLPDKNKTSERD 276
NNI G + RHL + + N C +PD N SE+D
Sbjct: 205 NNISG-AMPRHLSNFTSMSGSINGCGDIPDNNSPSEKD 241
>03_05_0429 -
24157060-24157671,24158000-24158468,24158679-24158752,
24159231-24159280,24159368-24159449,24159526-24159575,
24159666-24159708,24159804-24159884,24159988-24160033,
24160151-24160197,24160358-24160423,24160701-24160767,
24160913-24160998
Length = 590
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 434 FGQFFSIQYGDIHKHNNIFGNILQRHLQS 348
F FFS+Q ++ KH ++ +LQ HL+S
Sbjct: 232 FASFFSLQAAELLKHPHLQPYVLQVHLKS 260
>09_03_0111 -
12440818-12441129,12441242-12441585,12441663-12441989,
12443444-12443602,12443687-12443784,12444745-12444821
Length = 438
Score = 28.3 bits (60), Expect = 8.6
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -2
Query: 698 INVKRGNFSILNCSCFEGRFLKNEFC 621
+ + + +CSC+ G ++KN FC
Sbjct: 72 MGICKNTIGSFDCSCYPGSYMKNGFC 97
>08_01_1068 +
10899965-10900129,10900408-10900562,10900688-10900996,
10901870-10901939,10902504-10902802,10904305-10904724,
10906063-10906324
Length = 559
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +2
Query: 299 YPANECTRLVPFSKENRFASVFAKCCQIYCCVCECLRIEC*KTGQSCFWHVLWFQSRKTK 478
+ AN T++VP ++ R +S F+ C++ +CFW V W RK +
Sbjct: 85 HAANALTKVVPILQK-RLSSSFSDRCRMAVSAGVIW-------SSACFWKVAW---RKLQ 133
Query: 479 IRRACPALLDRW 514
+ + PA RW
Sbjct: 134 LTTSPPATPSRW 145
>07_03_0454 + 18364654-18366594
Length = 646
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/102 (16%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = -2
Query: 416 IQYGDIHKHNNIFGNI-LQRHLQSDFPLKMEPNVCIHLPDKNKTSERDMLIRRFYIINRD 240
I +G++ N + ++ + + + ++P+K+ LPD +K + + +
Sbjct: 471 IVHGNVSTVNILLDDLSVLKVISRNYPVKIAGYGTSGLPDIDKAQHTGFFMEDSLVTSHG 530
Query: 239 NNGSIYATGKIRNVPLDMQRMSVEDFDRLFEMDKIDGPSEEI 114
+Y G + +++S+++ D +FE GP ++
Sbjct: 531 KEHDVYCFGLVLLTLFTWKKVSLQEADTVFEQLWDIGPPHDV 572
>01_05_0189 +
19075411-19075497,19075603-19075682,19076707-19076851,
19077259-19078116,19078664-19078724,19082571-19082680
Length = 446
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/90 (22%), Positives = 39/90 (43%)
Frame = -2
Query: 392 HNNIFGNILQRHLQSDFPLKMEPNVCIHLPDKNKTSERDMLIRRFYIINRDNNGSIYATG 213
H N F + + +H FP++ E + ++ + NK + + +YI Y+ G
Sbjct: 97 HLNGFPDEVSKHFSLGFPVQWENIINANMAEMNKQPQSPLKSTEYYIEKFLRGNLKYSMG 156
Query: 212 KIRNVPLDMQRMSVEDFDRLFEMDKIDGPS 123
L++ + S D DR F +++ S
Sbjct: 157 LFSWDGLNIYQGSRSDADR-FPSERLSNSS 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,388,290
Number of Sequences: 37544
Number of extensions: 534857
Number of successful extensions: 1435
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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