Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c21
         (888 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   3.1  
Z69982-1|CAA93822.1|  143|Anopheles gambiae lectin protein.            25   4.1  
AY745219-1|AAU93486.1|  104|Anopheles gambiae cytochrome P450 pr...    24   5.4  
AY146737-1|AAO12097.1|  119|Anopheles gambiae odorant-binding pr...    24   7.1  
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    24   7.1  
DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domai...    23   9.4  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          23   9.4  
AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide recepto...    23   9.4  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 641 ICLRNNYNSVLKSCLVSH*SPFAPATTSLSTRVAPIER 754
           +C++  YN +++S L      ++P T S   R+  I+R
Sbjct: 886 MCIKAVYNCIVRSVLEYSCVVWSPTTASSIARIEAIQR 923


>Z69982-1|CAA93822.1|  143|Anopheles gambiae lectin protein.
          Length = 143

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 84  AVNGAHHVHFNFFR--RSVYFVHFEQSIKI 167
           AVNGAH+  FN      SV FVH  +   +
Sbjct: 108 AVNGAHYCDFNHRMPYASVRFVHIGEGANV 137


>AY745219-1|AAU93486.1|  104|Anopheles gambiae cytochrome P450
           protein.
          Length = 104

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
 Frame = +1

Query: 418 LKNWPKL-LLAR-----FMVPKSENQNPQGLPCTLGPMVYV 522
           L+ WP   LL R     F +P +EN +   +P  +G  +YV
Sbjct: 21  LRKWPSHPLLVRECTKPFTIPATENGDRAAIPLKVGDKLYV 61


>AY146737-1|AAO12097.1|  119|Anopheles gambiae odorant-binding
           protein AgamOBP27 protein.
          Length = 119

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 695 NVKRGNFSILNCSCFEGRFLK 633
           +++ GNFS+ N  CF   F+K
Sbjct: 32  SLRAGNFSVRNSLCFGECFVK 52


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 18  IGLFGNFFIIHVRHLHFFAVLDAVNGAHHVHFNF 119
           +G F N+ + H++ +++  +L A   +    FNF
Sbjct: 117 VGFFNNYNLCHMKSINWEEILLAPQTSMQYTFNF 150


>DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 121

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 695 NVKRGNFSILNCSCFEGRFLKNEFCR 618
           N++RG+       C EG F +N + R
Sbjct: 79  NIRRGDHLACTKHCVEGCFCRNGYVR 104


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 282 TRHVDSSVLHNQPRQQRINLRHRKNQKR 199
           +RH DSS  H   + +R   R R   +R
Sbjct: 631 SRHSDSSSRHRSSKHERDRSRDRDRDRR 658


>AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide receptor
           protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 461 QSRKTKIRRACPALLDRWCT*SCRWPAPTPRYFYRARDT 577
           +S  TK+   C     R    S R P+P P  +Y AR+T
Sbjct: 418 RSTSTKLSN-CSMRTIRTTVRSTRAPSPGPIVYYPARET 455


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 985,172
Number of Sequences: 2352
Number of extensions: 23496
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95507181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)