Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c21
(888 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X63337-1|CAA44937.1| 177|Homo sapiens high sulfur keratin protein. 31 7.4
X04385-1|CAA27972.1| 2813|Homo sapiens protein ( Human mRNA for ... 31 7.4
M25865-1|AAB59458.1| 2813|Homo sapiens von Willebrand factor pro... 31 7.4
M10321-1|AAB59512.1| 2074|Homo sapiens F8VWF protein. 31 7.4
BC105071-1|AAI05072.1| 177|Homo sapiens keratin associated prot... 31 7.4
BC105069-1|AAI05070.1| 177|Homo sapiens keratin associated prot... 31 7.4
BC103846-1|AAI03847.1| 127|Homo sapiens keratin associated prot... 31 7.4
BC103845-1|AAI03846.1| 127|Homo sapiens keratin associated prot... 31 7.4
BC101152-1|AAI01153.1| 177|Homo sapiens KRTAP1-3 protein protein. 31 7.4
AJ406942-1|CAC27581.1| 127|Homo sapiens keratin associated prot... 31 7.4
AJ406926-1|CAC27565.1| 177|Homo sapiens keratin associated prot... 31 7.4
AB081338-1|BAC15619.1| 177|Homo sapiens keratin associated prot... 31 7.4
AB052934-1|BAB61026.1| 177|Homo sapiens keratin associated prot... 31 7.4
>X63337-1|CAA44937.1| 177|Homo sapiens high sulfur keratin protein.
Length = 177
Score = 30.7 bits (66), Expect = 7.4
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +2
Query: 236 CCRG*LCKTDESTCRVR*F---CSYPANECTRLVPFSKENRFASVFAKCCQIYCCVCECL 406
CC+ C+T S+C+ R C P+ T F + + + CCQ CC C
Sbjct: 24 CCQPSCCET--SSCQPRCCETSCCQPSCCQTSFCGFPSFSTGGTCDSSCCQPSCCETSCC 81
Query: 407 RIEC*KTGQSC 439
+ C +T SC
Sbjct: 82 QPSCYQT-SSC 91
>X04385-1|CAA27972.1| 2813|Homo sapiens protein ( Human mRNA for
pre-pro-von Willebrand factor. ).
Length = 2813
Score = 30.7 bits (66), Expect = 7.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 260 TDESTCRVR*FCSYPANECTRLVPFS-KENRFASVF-AKCCQIYCCVCECL 406
T+ CR C+ EC R+ P S +R ++ +CC Y C C C+
Sbjct: 2349 TNPGECRPNFTCACRKEECKRVSPPSCPPHRLPTLRKTQCCDEYECACNCV 2399
>M25865-1|AAB59458.1| 2813|Homo sapiens von Willebrand factor protein.
Length = 2813
Score = 30.7 bits (66), Expect = 7.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 260 TDESTCRVR*FCSYPANECTRLVPFS-KENRFASVF-AKCCQIYCCVCECL 406
T+ CR C+ EC R+ P S +R ++ +CC Y C C C+
Sbjct: 2349 TNPGECRPNFTCACRKEECKRVSPPSCPPHRLPTLRKTQCCDEYECACNCV 2399
>M10321-1|AAB59512.1| 2074|Homo sapiens F8VWF protein.
Length = 2074
Score = 30.7 bits (66), Expect = 7.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 260 TDESTCRVR*FCSYPANECTRLVPFS-KENRFASVF-AKCCQIYCCVCECL 406
T+ CR C+ EC R+ P S +R ++ +CC Y C C C+
Sbjct: 1610 TNPGECRPNFTCACRKEECKRVSPPSCPPHRLPTLRKTQCCDEYECACNCV 1660
>BC105071-1|AAI05072.1| 177|Homo sapiens keratin associated protein
1-1 protein.
Length = 177
Score = 30.7 bits (66), Expect = 7.4
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +2
Query: 236 CCRG*LCKTDESTCRVR*F---CSYPANECTRLVPFSKENRFASVFAKCCQIYCCVCECL 406
CC+ C+T S+C+ R C P+ T F + + + CCQ CC C
Sbjct: 24 CCQPSCCET--SSCQPRCCETSCCQPSCCQTSFCGFPSFSTGGTCDSSCCQPSCCETSCC 81
Query: 407 RIEC*KTGQSC 439
+ C +T SC
Sbjct: 82 QPSCYQT-SSC 91
>BC105069-1|AAI05070.1| 177|Homo sapiens keratin associated protein
1-1 protein.
Length = 177
Score = 30.7 bits (66), Expect = 7.4
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +2
Query: 236 CCRG*LCKTDESTCRVR*F---CSYPANECTRLVPFSKENRFASVFAKCCQIYCCVCECL 406
CC+ C+T S+C+ R C P+ T F + + + CCQ CC C
Sbjct: 24 CCQPSCCET--SSCQPRCCETSCCQPSCCQTSFCGFPSFSTGGTCDSSCCQPSCCETSCC 81
Query: 407 RIEC*KTGQSC 439
+ C +T SC
Sbjct: 82 QPSCYQT-SSC 91
>BC103846-1|AAI03847.1| 127|Homo sapiens keratin associated protein
4-10 protein.
Length = 127
Score = 30.7 bits (66), Expect = 7.4
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +2
Query: 236 CCRG*LCKTDESTCRVR*FCSYPANECTRLVPFSKENRFASVFAKCCQIYCCVCECLRIE 415
CCR C+T TCR S + C R + R + + CC+ CC C R
Sbjct: 64 CCRPVCCQT---TCRP----SCGVSSCCRPLCCQTTCRPSCGVSSCCRPLCCQTTCCRTT 116
Query: 416 C*K---TGQSC 439
C + G SC
Sbjct: 117 CCRPSCCGSSC 127
>BC103845-1|AAI03846.1| 127|Homo sapiens keratin associated protein
4-10 protein.
Length = 127
Score = 30.7 bits (66), Expect = 7.4
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +2
Query: 236 CCRG*LCKTDESTCRVR*FCSYPANECTRLVPFSKENRFASVFAKCCQIYCCVCECLRIE 415
CCR C+T TCR S + C R + R + + CC+ CC C R
Sbjct: 64 CCRPVCCQT---TCRP----SCGVSSCCRPLCCQTTCRPSCGVSSCCRPLCCQTTCCRTT 116
Query: 416 C*K---TGQSC 439
C + G SC
Sbjct: 117 CCRPSCCGSSC 127
>BC101152-1|AAI01153.1| 177|Homo sapiens KRTAP1-3 protein protein.
Length = 177
Score = 30.7 bits (66), Expect = 7.4
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +2
Query: 236 CCRG*LCKTD---ESTCRVR*FCSYPANECTRLVPFSKENRFASVFAKCCQIYCCVCECL 406
CC+ C+T S C C P+ T F + + + CCQ CC C
Sbjct: 24 CCQPSCCETSCCQPSCCETS--CCQPSCCQTSFCGFPSFSTSGTCSSSCCQPSCCETSCC 81
Query: 407 RIEC*KTGQSC 439
+ C +T SC
Sbjct: 82 QPSCCQT-SSC 91
>AJ406942-1|CAC27581.1| 127|Homo sapiens keratin associated protein
4.10 protein.
Length = 127
Score = 30.7 bits (66), Expect = 7.4
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +2
Query: 236 CCRG*LCKTDESTCRVR*FCSYPANECTRLVPFSKENRFASVFAKCCQIYCCVCECLRIE 415
CCR C+T TCR S + C R + R + + CC+ CC C R
Sbjct: 64 CCRPVCCQT---TCRP----SCGVSSCCRPLCCQTTCRPSCGVSSCCRPLCCQTTCCRTT 116
Query: 416 C*K---TGQSC 439
C + G SC
Sbjct: 117 CCRPSCCGSSC 127
>AJ406926-1|CAC27565.1| 177|Homo sapiens keratin associated protein
1.1 protein.
Length = 177
Score = 30.7 bits (66), Expect = 7.4
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +2
Query: 236 CCRG*LCKTDESTCRVR*F---CSYPANECTRLVPFSKENRFASVFAKCCQIYCCVCECL 406
CC+ C+T S+C+ R C P+ T F + + + CCQ CC C
Sbjct: 24 CCQPSCCET--SSCQPRCCETSCCQPSCCQTSFCGFPSFSTGGTCDSSCCQPSCCETSCC 81
Query: 407 RIEC*KTGQSC 439
+ C +T SC
Sbjct: 82 QPSCYQT-SSC 91
>AB081338-1|BAC15619.1| 177|Homo sapiens keratin associated protein
1.8 protein.
Length = 177
Score = 30.7 bits (66), Expect = 7.4
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +2
Query: 236 CCRG*LCKTD---ESTCRVR*FCSYPANECTRLVPFSKENRFASVFAKCCQIYCCVCECL 406
CC+ C+T S C C P+ T F + + + CCQ CC C
Sbjct: 24 CCQPSCCETSCCQPSCCETS--CCQPSCCQTSFCGFPSFSTSGTCSSSCCQPSCCETSCC 81
Query: 407 RIEC*KTGQSC 439
+ C +T SC
Sbjct: 82 QPSCCQT-SSC 91
>AB052934-1|BAB61026.1| 177|Homo sapiens keratin associated protein
1.1A protein.
Length = 177
Score = 30.7 bits (66), Expect = 7.4
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +2
Query: 236 CCRG*LCKTDESTCRVR*F---CSYPANECTRLVPFSKENRFASVFAKCCQIYCCVCECL 406
CC+ C+T S+C+ R C P+ T F + + + CCQ CC C
Sbjct: 24 CCQPSCCET--SSCQPRCCETSCCQPSCCQTSFCGFPSFSTGGTCDSSCCQPSCCETSCC 81
Query: 407 RIEC*KTGQSC 439
+ C +T SC
Sbjct: 82 QPSCYQT-SSC 91
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,417,865
Number of Sequences: 237096
Number of extensions: 3040103
Number of successful extensions: 11406
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11242
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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