Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c21
(888 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT011344-1|AAR96136.1| 1447|Drosophila melanogaster RH51925p pro... 30 3.7
AY128431-1|AAM75024.1| 667|Drosophila melanogaster GM10569p pro... 30 3.7
AY060753-1|AAL28301.1| 271|Drosophila melanogaster GH20409p pro... 30 3.7
AE014296-2654|AAZ66062.1| 166|Drosophila melanogaster CG33687-P... 30 3.7
AE014134-406|AAF51257.1| 271|Drosophila melanogaster CG3557-PA ... 30 3.7
AE013599-2212|AAF58047.1| 1448|Drosophila melanogaster CG8443-PA... 30 3.7
AE014298-1518|AAF47970.1| 453|Drosophila melanogaster CG1637-PA... 30 4.9
BT025148-1|ABE73318.1| 270|Drosophila melanogaster IP04354p pro... 29 8.6
>BT011344-1|AAR96136.1| 1447|Drosophila melanogaster RH51925p protein.
Length = 1447
Score = 30.3 bits (65), Expect = 3.7
Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 7/183 (3%)
Frame = -2
Query: 884 NQPKRERVESGEDQQLVPYNNNNGAAFNVKHDETGVMCYFTPSSVQLEPRELTKMLWQEQ 705
N+ K + G+ QQ N N ++ + TP S+ + R+ K+ W +
Sbjct: 974 NKHKSSKGGKGQQQQQTTGNQNGSSSGSSNSSSASDWTLMTPRSLWQQIRKEAKVYWDWE 1033
Query: 704 M---AINVKRGNFSILNCSCFEGRFLKNEFCRLANLNSL---HEWEDKLYPE-PDKNIVV 546
+ +I + IL S L FC + L + +E K P D +IV
Sbjct: 1034 LDCDSIETAVSKYGILRIS------LMRAFCLRVGIQVLLREYNFESKHKPTFGDDDIVN 1087
Query: 545 LEPANGKTTYTIGPRVQGKPCGFWFSDFGTIKRAKSNFGQFFSIQYGDIHKHNNIFGNIL 366
+ P I PR + F G K + F + + + G ++ NN+FG +
Sbjct: 1088 VFP----IVKHISPRATD---AYNFYTTGQAKIQQGLFKEGYELISGALNLLNNVFGALH 1140
Query: 365 QRH 357
Q +
Sbjct: 1141 QEN 1143
>AY128431-1|AAM75024.1| 667|Drosophila melanogaster GM10569p
protein.
Length = 667
Score = 30.3 bits (65), Expect = 3.7
Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 7/183 (3%)
Frame = -2
Query: 884 NQPKRERVESGEDQQLVPYNNNNGAAFNVKHDETGVMCYFTPSSVQLEPRELTKMLWQEQ 705
N+ K + G+ QQ N N ++ + TP S+ + R+ K+ W +
Sbjct: 194 NKHKSSKGGKGQQQQQTTGNQNGSSSGSSNSSSASDWTLMTPRSLWQQIRKEAKVYWDWE 253
Query: 704 M---AINVKRGNFSILNCSCFEGRFLKNEFCRLANLNSL---HEWEDKLYPE-PDKNIVV 546
+ +I + IL S L FC + L + +E K P D +IV
Sbjct: 254 LDCDSIETAVSKYGILRIS------LMRAFCLKVGIQVLLREYNFESKHKPTFGDDDIVN 307
Query: 545 LEPANGKTTYTIGPRVQGKPCGFWFSDFGTIKRAKSNFGQFFSIQYGDIHKHNNIFGNIL 366
+ P I PR + F G K + F + + + G ++ NN+FG +
Sbjct: 308 VFP----IVKHISPRATD---AYNFYTTGQAKIQQGLFKEGYELISGALNLLNNVFGALH 360
Query: 365 QRH 357
Q +
Sbjct: 361 QEN 363
>AY060753-1|AAL28301.1| 271|Drosophila melanogaster GH20409p
protein.
Length = 271
Score = 30.3 bits (65), Expect = 3.7
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -3
Query: 598 CTNGKTSCIPSPIKISWCWSRPTARLRTPSVQECRASPADFGFPTLEP*NVPKAT 434
C++G +S PS S C S+P+ P C ASP P P + PK++
Sbjct: 85 CSSGSSSAYPSSSAWSTCCSKPSTICCYPKPTRCCASPKAPLVP-CSPMDTPKSS 138
>AE014296-2654|AAZ66062.1| 166|Drosophila melanogaster CG33687-PA
protein.
Length = 166
Score = 30.3 bits (65), Expect = 3.7
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -2
Query: 680 NFSILNCSCFEGRFLKNEFCRLANLNSLHEWED---KLYPEPDKNIVV 546
+F+ L C + F E CR+ +N H++ D KLY P NI++
Sbjct: 13 SFTNLKCEMIDRTFGNFEMCRIKAVNRTHKYIDINLKLYILPINNIMI 60
>AE014134-406|AAF51257.1| 271|Drosophila melanogaster CG3557-PA
protein.
Length = 271
Score = 30.3 bits (65), Expect = 3.7
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -3
Query: 598 CTNGKTSCIPSPIKISWCWSRPTARLRTPSVQECRASPADFGFPTLEP*NVPKAT 434
C++G +S PS S C S+P+ P C ASP P P + PK++
Sbjct: 85 CSSGSSSAYPSSSAWSTCCSKPSTICCYPKPTRCCASPKAPLVP-CSPMDTPKSS 138
>AE013599-2212|AAF58047.1| 1448|Drosophila melanogaster CG8443-PA
protein.
Length = 1448
Score = 30.3 bits (65), Expect = 3.7
Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 7/183 (3%)
Frame = -2
Query: 884 NQPKRERVESGEDQQLVPYNNNNGAAFNVKHDETGVMCYFTPSSVQLEPRELTKMLWQEQ 705
N+ K + G+ QQ N N ++ + TP S+ + R+ K+ W +
Sbjct: 975 NKHKSSKGGKGQQQQQTTGNQNGSSSGSSNSSSASDWTLMTPRSLWQQIRKEAKVYWDWE 1034
Query: 704 M---AINVKRGNFSILNCSCFEGRFLKNEFCRLANLNSL---HEWEDKLYPE-PDKNIVV 546
+ +I + IL S L FC + L + +E K P D +IV
Sbjct: 1035 LDCDSIETAVSKYGILRIS------LMRAFCLKVGIQVLLREYNFESKHKPTFGDDDIVN 1088
Query: 545 LEPANGKTTYTIGPRVQGKPCGFWFSDFGTIKRAKSNFGQFFSIQYGDIHKHNNIFGNIL 366
+ P I PR + F G K + F + + + G ++ NN+FG +
Sbjct: 1089 VFP----IVKHISPRATD---AYNFYTTGQAKIQQGLFKEGYELISGALNLLNNVFGALH 1141
Query: 365 QRH 357
Q +
Sbjct: 1142 QEN 1144
>AE014298-1518|AAF47970.1| 453|Drosophila melanogaster CG1637-PA,
isoform A protein.
Length = 453
Score = 29.9 bits (64), Expect = 4.9
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 465 LWNHKTCQKQLWPVF*HSIRRHSQTQQYI 379
LW H+ C +++WP++ +++ S + Y+
Sbjct: 339 LWAHEHCYERMWPMYNYTVFNGSLAEPYV 367
>BT025148-1|ABE73318.1| 270|Drosophila melanogaster IP04354p
protein.
Length = 270
Score = 29.1 bits (62), Expect = 8.6
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +2
Query: 359 VFAKCCQIYCCVCECLRIEC*KTGQSCF 442
+++ CC YCC C C C CF
Sbjct: 5 IYSCCCCCYCCCCTCCCCCCCSCCCRCF 32
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,449,688
Number of Sequences: 53049
Number of extensions: 957688
Number of successful extensions: 2994
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2990
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4332305172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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