Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c21
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonin...    35   0.068
U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase ...    35   0.068
U70851-8|AAB09131.1|  164|Caenorhabditis elegans Calmodulin rela...    29   4.4  

>U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonine
           kinase protein.
          Length = 982

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = -2

Query: 206 RNVPLDMQRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTDMNNKKITE 27
           +N  LD ++  +ED ++  +  K     +++K+Y    +   KY KE Q T + +  +  
Sbjct: 592 QNNELDKRKKDIEDGEKKMKKTKNSQNQQQMKLYSAQQLKEYKYNKEAQKTRLRSLNMPR 651

Query: 26  KPYSLAFK 3
             Y  A K
Sbjct: 652 STYENAMK 659


>U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase
           protein 18, isoforma protein.
          Length = 982

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = -2

Query: 206 RNVPLDMQRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTDMNNKKITE 27
           +N  LD ++  +ED ++  +  K     +++K+Y    +   KY KE Q T + +  +  
Sbjct: 592 QNNELDKRKKDIEDGEKKMKKTKNSQNQQQMKLYSAQQLKEYKYNKEAQKTRLRSLNMPR 651

Query: 26  KPYSLAFK 3
             Y  A K
Sbjct: 652 STYENAMK 659


>U70851-8|AAB09131.1|  164|Caenorhabditis elegans Calmodulin related
           genes protein 3 protein.
          Length = 164

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 326 PNVCIHLPDKNKTSERDMLIRRFYIINRDNNGSIYATG-KIRNVPLDMQRMSVEDFDRLF 150
           P  C+ +    K ++ +M+   F I +RD NG I A   K+  + + M    VE  + + 
Sbjct: 85  PEFCVMMKRIMKETDSEMIREAFKIFDRDGNGVITANEFKLFMINMGMCFDEVEVEEMMN 144

Query: 149 EMDKIDGPSE 120
           E+D  DG  E
Sbjct: 145 EVD-CDGNGE 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,566,313
Number of Sequences: 27780
Number of extensions: 502440
Number of successful extensions: 1490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)