Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c19
(301 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41679 Cluster: Uncharacterized 28.5 kDa protein in PK2... 188 2e-47
UniRef50_O10361 Cluster: Uncharacterized 26.5 kDa protein; n=7; ... 88 4e-17
UniRef50_A4VCV0 Cluster: Putative uncharacterized protein; n=1; ... 35 0.41
UniRef50_UPI0000498695 Cluster: hypothetical protein 238.t00003;... 34 0.54
UniRef50_Q21PL3 Cluster: NnrS; n=1; Saccharophagus degradans 2-4... 34 0.72
UniRef50_Q7RCC9 Cluster: Mechanosensitive ion channel, putative;... 33 1.7
UniRef50_O62413 Cluster: Putative uncharacterized protein sri-18... 32 2.2
UniRef50_Q2FAV9 Cluster: Rh13; n=2; Cercopithecine herpesvirus 8... 32 2.9
UniRef50_Q7UVY6 Cluster: Putative uncharacterized protein; n=1; ... 31 3.8
UniRef50_A3UNQ4 Cluster: Small-conductance mechanosensitive chan... 31 5.1
UniRef50_A7LIC4 Cluster: NADH dehydrogenase subunit 4; n=1; Argo... 31 5.1
UniRef50_Q8PGM0 Cluster: Putative uncharacterized protein XAC359... 31 6.7
UniRef50_Q4AIL2 Cluster: TrkA-N:TrkA-C:TrkA-C; n=1; Chlorobium p... 31 6.7
UniRef50_A0EAK7 Cluster: Chromosome undetermined scaffold_86, wh... 31 6.7
UniRef50_Q9YW81 Cluster: ORF MSV011 leucine rich repeat gene fam... 30 8.9
UniRef50_A7BTW5 Cluster: Putative uncharacterized protein; n=2; ... 30 8.9
UniRef50_A2DA94 Cluster: Putative uncharacterized protein; n=1; ... 30 8.9
UniRef50_Q8SV36 Cluster: Similarity to HYPOTHETICAL INTEGRAL MEM... 30 8.9
>UniRef50_P41679 Cluster: Uncharacterized 28.5 kDa protein in
PK2-LEF7 intergenic region; n=5;
Nucleopolyhedrovirus|Rep: Uncharacterized 28.5 kDa
protein in PK2-LEF7 intergenic region - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 247
Score = 188 bits (458), Expect = 2e-47
Identities = 85/99 (85%), Positives = 94/99 (94%)
Frame = -3
Query: 299 LELLILLGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMC 120
+ELLILLGHTMG YTDY+Y KSCYMVILFVSVMS TIVMGLECLKTKL+D+SLMFN+F+C
Sbjct: 135 VELLILLGHTMGTYTDYQYVKSCYMVILFVSVMSVTIVMGLECLKTKLIDNSLMFNAFVC 194
Query: 119 ALYIMIATVWSLKNNLTSFYASNLQSIQVVPFSYNDPPP 3
ALYI+IA +WSLKNNLTS+Y SNLQSIQVVPFSYNDPPP
Sbjct: 195 ALYIVIAIMWSLKNNLTSYYVSNLQSIQVVPFSYNDPPP 233
>UniRef50_O10361 Cluster: Uncharacterized 26.5 kDa protein; n=7;
Nucleopolyhedrovirus|Rep: Uncharacterized 26.5 kDa
protein - Orgyia pseudotsugata multicapsid polyhedrosis
virus (OpMNPV)
Length = 243
Score = 87.8 bits (208), Expect = 4e-17
Identities = 42/99 (42%), Positives = 61/99 (61%)
Frame = -3
Query: 299 LELLILLGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMC 120
+EL +LLGH +G Y+DYRYAK+CYM+ LFVS I +G +K+ + +L+ +
Sbjct: 134 VELTVLLGHALGTYSDYRYAKACYMLALFVSAAVAVITVGASGMKSAPLCDNLLVAVVLS 193
Query: 119 ALYIMIATVWSLKNNLTSFYASNLQSIQVVPFSYNDPPP 3
Y+++A VW+ + NLQ +QVVPF NDPPP
Sbjct: 194 IAYLLVAIVWAARKEAA---GPNLQRVQVVPF--NDPPP 227
>UniRef50_A4VCV0 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 275
Score = 34.7 bits (76), Expect = 0.41
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +1
Query: 64 KLVKLFFKDHTVAIIMYKAHINELNIKLLSTSFVF 168
KL LFFK+ + +Y+A IN LN+ LS SF+F
Sbjct: 119 KLYLLFFKE--ILRYLYQAQINNLNLNFLSCSFIF 151
>UniRef50_UPI0000498695 Cluster: hypothetical protein 238.t00003;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 238.t00003 - Entamoeba histolytica HM-1:IMSS
Length = 1755
Score = 34.3 bits (75), Expect = 0.54
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Frame = -3
Query: 218 LFVSVM-SFTIVMGLECLKTKLVDSSLM---FNSFMCA-LYIMIATVWSLKNNLTSFYAS 54
LFV+ +F + + CL KL DS L+ NS C+ LYI ++VWS+ N +T+++
Sbjct: 381 LFVNQKKAFNTIDNITCLNFKL-DSVLVQSDINSINCSKLYITSSSVWSISNIITNYFEF 439
Query: 53 NLQSIQVV 30
+ + +V
Sbjct: 440 SKSTFFIV 447
>UniRef50_Q21PL3 Cluster: NnrS; n=1; Saccharophagus degradans
2-40|Rep: NnrS - Saccharophagus degradans (strain 2-40 /
ATCC 43961 / DSM 17024)
Length = 418
Score = 33.9 bits (74), Expect = 0.72
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -3
Query: 287 ILLGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYI 108
+ LGHT T R+A Y+ I +++ F +VMG + L ++ M+ CAL++
Sbjct: 343 VCLGHTGRPLTLPRFAIGIYISITLAALLRFAVVMGWVDFRVGLAIAATMW-VVACALFV 401
Query: 107 MI 102
+I
Sbjct: 402 II 403
>UniRef50_Q7RCC9 Cluster: Mechanosensitive ion channel, putative;
n=6; Plasmodium (Vinckeia)|Rep: Mechanosensitive ion
channel, putative - Plasmodium yoelii yoelii
Length = 1715
Score = 32.7 bits (71), Expect = 1.7
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = -3
Query: 236 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALY 111
SC+ +ILFV++ SF+I+M + + K++ L+ S +C+ +
Sbjct: 132 SCF-IILFVNIASFSIIMIIHAIIQKVIIEKLLQPSALCSAF 172
>UniRef50_O62413 Cluster: Putative uncharacterized protein sri-18;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein sri-18 - Caenorhabditis elegans
Length = 346
Score = 32.3 bits (70), Expect = 2.2
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = -3
Query: 284 LLGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCAL--- 114
L+ + G DYRY + +IL + + F+I+M L + ++ F S +
Sbjct: 34 LICYHHGMIDDYRYYLLYFQIILLIFDIYFSILMVPIPLFPVIGGYTIGFLSNFFGISTH 93
Query: 113 YIMIATVWSLKNNLTSFYASNLQSIQVV 30
Y M+ T+W + N T + S L+ QVV
Sbjct: 94 YQMVFTLWCIGNTNTCIFISLLKRHQVV 121
>UniRef50_Q2FAV9 Cluster: Rh13; n=2; Cercopithecine herpesvirus
8|Rep: Rh13 - Cercopithecine herpesvirus 8 (Rhesus
cytomegalovirus)
Length = 104
Score = 31.9 bits (69), Expect = 2.9
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +1
Query: 79 FFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSKPITIVKLI 204
F HTV + Y AH +L I LLSTSF +T+ LI
Sbjct: 45 FVLGHTVVLTRYAAHSPKLFIVLLSTSFRMTELSHVTVWFLI 86
>UniRef50_Q7UVY6 Cluster: Putative uncharacterized protein; n=1;
Pirellula sp.|Rep: Putative uncharacterized protein -
Rhodopirellula baltica
Length = 514
Score = 31.5 bits (68), Expect = 3.8
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 152 DSSLMFNSFMCALYIMIATVWSLKNNLTSFY-ASNLQSIQVVPFSYND 12
D ++ + C L + +A WSL ++ S A L I+ PFSY+D
Sbjct: 82 DPTMNHSRINCILVVALAVGWSLSFSVLSVVSAQGLMDIEEPPFSYSD 129
>UniRef50_A3UNQ4 Cluster: Small-conductance mechanosensitive
channel; n=2; Vibrio|Rep: Small-conductance
mechanosensitive channel - Vibrio splendidus 12B01
Length = 191
Score = 31.1 bits (67), Expect = 5.1
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -3
Query: 248 RYAKSCYMVILFVSVMS-FTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNL 72
++ C+ ++LF+ ++ FTIV+ L D SL +S L + + WS+ +NL
Sbjct: 50 QFVIKCFNIVLFLLFIAVFTIVLNLG-----FGDISLFLSSIFAVLGVALFAQWSILSNL 104
Query: 71 TS 66
T+
Sbjct: 105 TA 106
>UniRef50_A7LIC4 Cluster: NADH dehydrogenase subunit 4; n=1;
Argopecten irradians|Rep: NADH dehydrogenase subunit 4 -
Aequipecten irradians (Bay scallop) (Argopecten
irradians)
Length = 438
Score = 31.1 bits (67), Expect = 5.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 255 GLSICQIMLYGYIVCFSYEFYY 190
G+SIC I +GY++CF F++
Sbjct: 356 GMSICSIFPFGYVLCFILLFFF 377
>UniRef50_Q8PGM0 Cluster: Putative uncharacterized protein XAC3596;
n=1; Xanthomonas axonopodis pv. citri|Rep: Putative
uncharacterized protein XAC3596 - Xanthomonas axonopodis
pv. citri
Length = 581
Score = 30.7 bits (66), Expect = 6.7
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -3
Query: 260 YTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMI-ATVWSL 84
+ DYRY S V++ ++ + GL D+S + M A +I+ A +W+
Sbjct: 95 FLDYRYFDSNGAVLVVINYLLACSTFGLLAWCALQRDASRRRDGRMIAAFILCCALLWTQ 154
Query: 83 KNNLTSFYASNLQSIQVVP 27
NNLT + S ++P
Sbjct: 155 SNNLTWAFQSQFFLANLLP 173
>UniRef50_Q4AIL2 Cluster: TrkA-N:TrkA-C:TrkA-C; n=1; Chlorobium
phaeobacteroides BS1|Rep: TrkA-N:TrkA-C:TrkA-C -
Chlorobium phaeobacteroides BS1
Length = 337
Score = 30.7 bits (66), Expect = 6.7
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 254 DYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSF-MCALYIMIATVWSLKN 78
DY + + YM ++ VS + F V L KL S L+ +S + ++ + T +
Sbjct: 32 DYNFVSALYMTVITVSTVGFGEVEPLSD-GGKLFTSGLILSSLVVLGYFVSVLTQNLFHS 90
Query: 77 NLTSFYASN 51
L+ FYA N
Sbjct: 91 QLSFFYAGN 99
>UniRef50_A0EAK7 Cluster: Chromosome undetermined scaffold_86, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_86,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 521
Score = 30.7 bits (66), Expect = 6.7
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 88 DHTVAIIMYKAHINELNIKLLSTSFVFKHSKPITIVKLITETNNITI 228
DH II K +N+L IKL+ +F+ KH++ +++ +E N I +
Sbjct: 417 DHDFCIITMKQMLNQLLIKLM--TFLSKHNEDQISIEIFSEQNFIDL 461
>UniRef50_Q9YW81 Cluster: ORF MSV011 leucine rich repeat gene family
protein, similar to Amsacta moorei entomopoxvirus Q3 ORF
SW:P28854; n=3; Melanoplus sanguinipes
entomopoxvirus|Rep: ORF MSV011 leucine rich repeat gene
family protein, similar to Amsacta moorei entomopoxvirus
Q3 ORF SW:P28854 - Melanoplus sanguinipes entomopoxvirus
(MsEPV)
Length = 505
Score = 30.3 bits (65), Expect = 8.9
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +1
Query: 64 KLVKLFFKDHTVAIIMYKAHINEL---NIKLLSTSFVFKHSKPITIVKLITETNNI 222
KL+KL ++ ++ I + H++ L NI S+++ + P +++L + NNI
Sbjct: 188 KLIKLNCSNNNISDIKFLEHLSNLEILNISYNKISYIYNYKLPNNLIELNCKYNNI 243
>UniRef50_A7BTW5 Cluster: Putative uncharacterized protein; n=2;
Beggiatoa|Rep: Putative uncharacterized protein -
Beggiatoa sp. PS
Length = 541
Score = 30.3 bits (65), Expect = 8.9
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 70 VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSKPITIVKLITETNNITI*HDLAYR 249
+K F +++++ HI++LN L+ ++ +H+ P+ + I N HDL Y
Sbjct: 189 IKHKFNSYSLSLKNELHHISQLNENYLAHEYLEEHNDPVLFHEFIEHANR----HDLQYL 244
Query: 250 *SVYAPIV 273
+ P V
Sbjct: 245 ADMRTPFV 252
>UniRef50_A2DA94 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 585
Score = 30.3 bits (65), Expect = 8.9
Identities = 17/70 (24%), Positives = 35/70 (50%)
Frame = -3
Query: 239 KSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFY 60
++C ++ M+ + G CL T +V + N+F C+L + T+ + +N S Y
Sbjct: 155 QNCQCKVILHKSMTGILNKGDSCLMTGIVKTEKNQNTFKCSLICLSFTI--ITDNRRSLY 212
Query: 59 ASNLQSIQVV 30
+ ++I+ V
Sbjct: 213 TISKRNIETV 222
>UniRef50_Q8SV36 Cluster: Similarity to HYPOTHETICAL INTEGRAL
MEMBRANE PROTEIN YA93_SCHPO; n=1; Encephalitozoon
cuniculi|Rep: Similarity to HYPOTHETICAL INTEGRAL
MEMBRANE PROTEIN YA93_SCHPO - Encephalitozoon cuniculi
Length = 729
Score = 30.3 bits (65), Expect = 8.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 261 VHGLSICQIMLYGYIVCFSYEFYYCYGFRMF 169
+H L++ +M GY +C S FY G R F
Sbjct: 676 LHNLNLLLVMWSGYAICESLSFYKFLGIRAF 706
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 262,379,654
Number of Sequences: 1657284
Number of extensions: 3987607
Number of successful extensions: 10913
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10911
length of database: 575,637,011
effective HSP length: 76
effective length of database: 449,683,427
effective search space used: 10342718821
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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