Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c19
(301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 29 0.11
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 26 1.0
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 26 1.4
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 1.8
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 24 5.5
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 23 7.3
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 23 7.3
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 23 7.3
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 23 9.6
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 23 9.6
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 23 9.6
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 29.5 bits (63), Expect = 0.11
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 261 VHGLSICQIMLYGYIVCFSYEFYYCYGFRMF 169
VHGL C ++LY Y C S+ +YY Y + F
Sbjct: 618 VHGL--CWVLLYYYQGCPSWTWYYPYHYAPF 646
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.2 bits (55), Expect = 1.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 110 IMIATVWSLKNNLTSFYASNLQSIQVVPFSYNDPP 6
+ ATV N + AS Q I V F+YN+PP
Sbjct: 147 LFCATVQISGNEIYIASASAFQQIYVWKFNYNNPP 181
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 1.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 299 LELLILLGHTMGAYTDYRYA 240
+E +IL+GH+MG Y YA
Sbjct: 171 IEKMILVGHSMGGYLSAVYA 190
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 67 LVKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSKPIT 189
L+ + FKD+ + + Y ++ L + L + + ++HS PIT
Sbjct: 1732 LLLMDFKDNDLVGVGYLRILSCLLVSLPAMVYTYEHSDPIT 1772
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 103 IIMYKAHINELNIKLLSTSFVFKHSKPITIVKLI 204
I+ +KAH+N +NIK F + +K++
Sbjct: 182 ILKHKAHMNTVNIKETKDGIDFYFGQRAHAIKMV 215
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 95 VWSLKNNLTSFYASNLQSIQVVPF 24
VW+ ++ L SFY +Q I+ + F
Sbjct: 179 VWAFESFLKSFYFKYIQIIEALSF 202
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 278 GHTMGAYTDYRYAKSCYMVILFVSVMSFTIVM 183
GH M TD YA+ C ++++ + T V+
Sbjct: 113 GHEMIFTTDDAYAEKCNDKVMYIDYKNITKVI 144
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 124 INELNIKLLSTSFVFKHSKPITIVKL 201
I +++ L S V+KHS P+T ++L
Sbjct: 281 IRFMSLDLTKLSQVYKHSLPVTDMQL 306
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 23.0 bits (47), Expect = 9.6
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Frame = -3
Query: 260 YTDYRYAK---SCYMVILFVSVMSFTIVMGLEC-LKTKLVDSSLMFNSFMCAL--YIMIA 99
+TD Y+ +C + L V +M T+ + L ++F++ + + YIMI
Sbjct: 115 FTDVAYSMRLFTCLLGSLLVPLMYGTVYFPTKSKTAASLAALFVIFDNGLITMSRYIMIE 174
Query: 98 TVWSLKNNLTSFYASNLQSIQVVPFS 21
+LT+FY S ++ Q PFS
Sbjct: 175 IPALYFMSLTAFYWSVYEAQQKRPFS 200
>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 83 KNNLTSFYASNLQSIQVVPFS 21
KN L + S+L SIQ +PFS
Sbjct: 18 KNFLLTIRFSSLVSIQYIPFS 38
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -2
Query: 240 QIMLYGYIVCFSYEFY 193
Q + Y ++CFSY +Y
Sbjct: 216 QNLYYDLLLCFSYSYY 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,131,268
Number of Sequences: 5004
Number of extensions: 18406
Number of successful extensions: 58
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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