Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c19
         (301 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365...    28   1.2  
01_06_0401 + 29038306-29038529,29038815-29038967,29039489-290402...    27   3.6  
08_02_0775 + 21070898-21071290,21071406-21071504,21075103-210751...    26   4.7  
08_01_0464 - 4092169-4092837,4093215-4093298,4094753-4094875,409...    26   4.7  
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846...    26   6.3  
05_04_0315 - 20139544-20140545,20140674-20141547,20142313-20142320     26   6.3  
01_06_1309 - 36170947-36171077,36171227-36172198,36172285-361724...    25   8.3  

>03_01_0475 +
           3656628-3656791,3656944-3657013,3657114-3657310,
           3657409-3657484,3657794-3657877,3658247-3658326,
           3658422-3658548,3658727-3658786,3658874-3658924,
           3659013-3659171,3659296-3659428,3659545-3659717
          Length = 457

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/74 (22%), Positives = 33/74 (44%)
 Frame = -3

Query: 287 ILLGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYI 108
           I+L +   AY    +   C++V+ +      T+  G +C K+  +     F     ALY 
Sbjct: 194 IVLQYRWIAYVSI-FVGCCFLVVFYAGTKEPTLQSGSDCKKSARISWGYWFKK---ALYY 249

Query: 107 MIATVWSLKNNLTS 66
            +A ++ L   +T+
Sbjct: 250 QVALLYMLARLITN 263


>01_06_0401 +
           29038306-29038529,29038815-29038967,29039489-29040296,
           29040393-29040488,29040982-29041251
          Length = 516

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 224 PYNMIWHIDNPCTRPLCG 277
           PY  +WH+  P   PL G
Sbjct: 33  PYRKVWHVPGPVPLPLIG 50


>08_02_0775 +
           21070898-21071290,21071406-21071504,21075103-21075126,
           21076344-21076391,21076536-21076788,21076945-21077055,
           21077544-21077680,21077778-21077891,21077982-21078181,
           21078268-21078516,21078730-21078886
          Length = 594

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 296 ELLILLGHTMGAYTDYRYAKSCYMVILFVSVMSFTIV 186
           E+ + +   +  + D  YAK  Y + LF+  ++F IV
Sbjct: 548 EIFVGICIILSGFYDVLYAKKGYYIFLFIQGLAFLIV 584


>08_01_0464 -
           4092169-4092837,4093215-4093298,4094753-4094875,
           4095001-4095042
          Length = 305

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -3

Query: 299 LELLILLGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSS 144
           L L+  +G  + A TD  YA+  Y V   +  ++F +V+ + CL+   + +S
Sbjct: 255 LFLMASIGTGLEALTD-DYARKLYYVAAALLTVAFLLVVVVNCLRVSELPTS 305


>09_05_0015 -
           20083143-20083308,20083645-20084017,20084362-20084675,
           20085164-20085512,20085678-20085837,20086307-20086618,
           20086700-20086820,20087225-20087277
          Length = 615

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 270 NGRVHGLSICQIMLYGYIVCFSYEFYYCYGFRMFE 166
           N  ++GL+I QI L G+I+ F +  Y  + + +F+
Sbjct: 381 NFSLYGLTINQITLPGWIMAFGWLVYLIWLWILFQ 415


>05_04_0315 - 20139544-20140545,20140674-20141547,20142313-20142320
          Length = 627

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = -3

Query: 257 TDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKN 78
           TD+ YA    +++L +S   F   + ++CLKT       +F S      I+ ++ WS  N
Sbjct: 22  TDHYYAPLRLILLLILSATCFGSELDVQCLKT-------IFQSVTDPNGILKSS-WSFVN 73

Query: 77  NLTSFYASNLQSIQ 36
           N T  Y      ++
Sbjct: 74  NGTPGYICKFTGVE 87


>01_06_1309 -
           36170947-36171077,36171227-36172198,36172285-36172413,
           36172535-36172779,36172904-36173055,36173202-36173306
          Length = 577

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 62  YASNLQSIQVVPFSYNDPPP 3
           YASN  ++ + PF+Y   PP
Sbjct: 424 YASNFPAMPLSPFNYTGTPP 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,886,909
Number of Sequences: 37544
Number of extensions: 97038
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)