Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c19
         (301 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27038| Best HMM Match : DUF1634 (HMM E-Value=2.9)                   30   0.30 
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   0.53 
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.92 
SB_57616| Best HMM Match : Oxidored_q1 (HMM E-Value=1.1)               28   1.2  
SB_41721| Best HMM Match : MFS_1 (HMM E-Value=2.2e-26)                 26   4.9  
SB_23389| Best HMM Match : LRR_3 (HMM E-Value=0.99)                    26   4.9  
SB_16189| Best HMM Match : rve (HMM E-Value=0.3)                       26   6.5  
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.5  
SB_36583| Best HMM Match : rve (HMM E-Value=9.4e-19)                   26   6.5  
SB_30995| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.5  
SB_7168| Best HMM Match : Death (HMM E-Value=1.9e-06)                  26   6.5  
SB_50673| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_55093| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_40907| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  

>SB_27038| Best HMM Match : DUF1634 (HMM E-Value=2.9)
          Length = 310

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 221 ILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWS-LKNNLTSFYASNL- 48
           ++F +V+     MG  C    L + S  F +    L + IAT W+ + + L  F+A++  
Sbjct: 55  VVFATVLMTFSAMGFNCFGQSLFEFSSSFTALGTLLQLAIATTWTYIFSLLFVFFANDFG 114

Query: 47  QSI 39
           QSI
Sbjct: 115 QSI 117


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 252 LSICQIMLYGYIVCFSYEFYYCY 184
           L  C    Y Y  C+ Y +YYCY
Sbjct: 467 LRYCYCYCYCYYYCYCYCYYYCY 489



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 243 CQIMLYGYIVCFSYEFYYCY 184
           C    Y Y  C+ Y +YYCY
Sbjct: 474 CYCYYYCYCYCYYYCYYYCY 493


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 224  VILFVSVMSFTIVMGLECLKTKLVDSSL-MFNSFMCALYIMIATVWSLKNNLTSFY 60
            VI + +  +F + +    +K +  D+ L    S   A +  IA VWS  N +  FY
Sbjct: 941  VISYTTTETFAVTVSSGMVKLQYADAILDTLVSIQIAKWTQIALVWSPTNKILQFY 996


>SB_57616| Best HMM Match : Oxidored_q1 (HMM E-Value=1.1)
          Length = 107

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -3

Query: 287 ILLGHTMGAYTDYRYAKSCYMVI-LFVSVMSFTIVMGLECLKTKLVDSS 144
           +L G  MG++   + A   YM++ + +S+ +FTIV+ L  +K  +V+ S
Sbjct: 29  VLWGIEMGSFESVQ-ASLVYMILYVIMSICTFTIVLALGGVKNLIVEFS 76


>SB_41721| Best HMM Match : MFS_1 (HMM E-Value=2.2e-26)
          Length = 440

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -3

Query: 281 LGHTMGAYTDYRYAKSCYMVILFVSVMSFT 192
           LG  M  YT Y Y  SC    L   V SFT
Sbjct: 296 LGDVMPLYTVYIYGLSCLFAGLSTIVASFT 325


>SB_23389| Best HMM Match : LRR_3 (HMM E-Value=0.99)
          Length = 348

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 176 ECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFY 60
           ECL  K++DS L  +  +  L +    + SL   ++SFY
Sbjct: 223 ECLDEKILDSKLDASHRLIILNMAAICITSLWKGISSFY 261


>SB_16189| Best HMM Match : rve (HMM E-Value=0.3)
          Length = 595

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 128 FMCALYIMIATVWSLKNNLTSFYASNLQSIQVVPFSYNDPP 6
           ++ AL I+I+ + + K  +T F   +   ++ VPF  + PP
Sbjct: 243 WVAALPIVISDMNTTKTRMTGFAPKDAIKLRRVPFKADKPP 283


>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/38 (23%), Positives = 27/38 (71%)
 Frame = +1

Query: 175 SKPITIVKLITETNNITI*HDLAYR*SVYAPIVWPNRI 288
           +K ++ ++L ++ +N+T  ++L+ R ++ +PI++P  +
Sbjct: 116 NKYVSPIELSSQVDNLTSYNNLSNRLTITSPIIYPTAL 153


>SB_36583| Best HMM Match : rve (HMM E-Value=9.4e-19)
          Length = 435

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 128 FMCALYIMIATVWSLKNNLTSFYASNLQSIQVVPFSYNDPP 6
           ++ AL I+I+ + + K  +T F   +   ++ VPF    PP
Sbjct: 357 WVTALPIVISDINATKTRMTGFAPKDAIKLRRVPFKTEKPP 397


>SB_30995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 128 FMCALYIMIATVWSLKNNLTSFYASNLQSIQVVPFSYNDPP 6
           ++ AL I+I+ + + K  +T F   +   ++ VPF  + PP
Sbjct: 189 WVAALPIVISDMNTTKTRMTGFAPKDAIKLRRVPFKADKPP 229


>SB_7168| Best HMM Match : Death (HMM E-Value=1.9e-06)
          Length = 206

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 96  CCNHNVQSAHKRVKHQTAI 152
           C  H+V+  +K+ KHQTA+
Sbjct: 156 CSQHHVKVPYKQRKHQTAV 174


>SB_50673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 299 LELLILLGHTMGAYTDYRYA 240
           LE  ILLGH++G Y    YA
Sbjct: 137 LEKFILLGHSLGGYLVTAYA 156


>SB_55093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 85  KDHTVAIIMYKAHINELNIKLLSTSFVFKHSKPITIVK 198
           +DH V I+      NEL I L+S      H + I+++K
Sbjct: 16  QDHVVNIVYKMFDENELTIPLVSGDGELSHKEFISVMK 53


>SB_40907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 91  HTVAI-IMYKAHINELNIKLLSTSFVF-KHSKPIT 189
           H + I ++YK++ N  N+K ++T F + K   PIT
Sbjct: 58  HDLVIKVLYKSYANRNNVKYVATLFAWGKGIPPIT 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,273,648
Number of Sequences: 59808
Number of extensions: 129412
Number of successful extensions: 498
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)