Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c19
         (301 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L04753-1|AAA29357.1|  511|Anopheles gambiae alpha-amylase protein.     25   0.82 
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    22   5.7  
AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR prot...    21   7.6  

>L04753-1|AAA29357.1|  511|Anopheles gambiae alpha-amylase protein.
          Length = 511

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 277 ATQWARTRIIDMPNHVI 227
           A  W R R++D  NH+I
Sbjct: 189 AVPWVRDRVVDFLNHLI 205


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
            protein protein.
          Length = 1881

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 11   DRCMKTEQLEYFVNLKRKN*SNYFLKTTLLQS*CTKRT*TS 133
            D C++ E  + F   +  N +NY LK     + C +   T+
Sbjct: 1839 DNCLQYEARKGFAGAEANNAANYQLKRDSETTLCARNLETT 1879


>AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR
           protein.
          Length = 460

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 236 SCYMVILFVSVMSF 195
           +CY+V LFV+ +SF
Sbjct: 86  TCYLVGLFVTWLSF 99


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,849
Number of Sequences: 2352
Number of extensions: 4549
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 55
effective length of database: 434,619
effective search space used: 19123236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)