Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c19
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical ...    32   0.067
Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical pr...    31   0.15 
Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical p...    30   0.35 
AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine r...    29   0.62 
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr...    28   1.4  
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr...    28   1.4  
AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical ...    27   2.5  
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    27   2.5  
Z79756-1|CAB02120.2|  494|Caenorhabditis elegans Hypothetical pr...    25   7.6  
U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.       25   7.6  
L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine t...    25   7.6  
AF101318-11|ABA00165.1|   67|Caenorhabditis elegans Hypothetical...    25   7.6  
AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated...    25   7.6  
AF016670-6|AAB66103.2|  839|Caenorhabditis elegans Hypothetical ...    25   7.6  
AC006675-3|AAK84550.1|  335|Caenorhabditis elegans Serpentine re...    25   7.6  

>AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical
           protein Y22F5A.2 protein.
          Length = 346

 Score = 32.3 bits (70), Expect = 0.067
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
 Frame = -3

Query: 284 LLGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCAL--- 114
           L+ +  G   DYRY    + +IL +  + F+I+M    L   +   ++ F S    +   
Sbjct: 34  LICYHHGMIDDYRYYLLYFQIILLIFDIYFSILMVPIPLFPVIGGYTIGFLSNFFGISTH 93

Query: 113 YIMIATVWSLKNNLTSFYASNLQSIQVV 30
           Y M+ T+W + N  T  + S L+  QVV
Sbjct: 94  YQMVFTLWCIGNTNTCIFISLLKRHQVV 121


>Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical
           protein C31A11.10 protein.
          Length = 273

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
 Frame = -3

Query: 260 YTDYRY-AKSCYMVILFVSVMSFT--IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVW 90
           Y +YR    +C++    + ++S    I+ G+ C    ++D+ L  +SF+CA+     T W
Sbjct: 115 YYNYRQNLLNCFVWFFIICIVSIDQYILFGV-C--DVVIDTPLDCDSFLCAMNQCYTTYW 171

Query: 89  SLKNNLTSFYASNLQSIQVVPF 24
            L   +T+F  SN+    VV F
Sbjct: 172 LLHERITTF--SNVFFSAVVTF 191


>Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.8 protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = -3

Query: 236 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFYA 57
           SCY +I+ +  + F           KLV  S+    F   L I+ A+VW L N+L +   
Sbjct: 100 SCYAIIISLITIHFYYRYLSVMFPVKLVRFSVRNLPFWILLVILNASVWFLLNSLVN-GP 158

Query: 56  SNLQSIQVVP 27
           S +Q   ++P
Sbjct: 159 SEIQDAILIP 168


>AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 57 protein.
          Length = 280

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 18/77 (23%), Positives = 32/77 (41%)
 Frame = -3

Query: 260 YTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLK 81
           Y  +R   S Y+V+ F+S+  F     L      ++D  +   +F C +       W + 
Sbjct: 116 YHKHRNKISMYLVLFFISLFVFFDQFMLFGYCGNVIDVPVNCENFQCTVNQCYLQYWMVH 175

Query: 80  NNLTSFYASNLQSIQVV 30
             +  F  S+L +I  V
Sbjct: 176 EQVVFFVISSLSTILFV 192


>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
            R07G3.3a protein.
          Length = 1982

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 70   VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 180
            +KL F D T  I  YK  I  LN+K+L    + K  K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397


>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
            R07G3.3b protein.
          Length = 1987

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 70   VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 180
            +KL F D T  I  YK  I  LN+K+L    + K  K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397


>AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical
           protein Y113G7A.3 protein.
          Length = 821

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 88  DHTVAIIMY--KAHINELNIKLLSTSFVFKHSKPIT 189
           D  V +I Y     ++ELN + +S S+VFK +K +T
Sbjct: 165 DALVGLITYGRMVQLHELNTQGISRSYVFKGTKEVT 200


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 95  VWSLKNNLTSFYASNLQSIQVVPFSYNDP 9
           VWSL     +FY+  L S+  +PFS   P
Sbjct: 16  VWSLAVLCLAFYSRRLSSLASLPFSKTTP 44


>Z79756-1|CAB02120.2|  494|Caenorhabditis elegans Hypothetical
           protein F53C11.1 protein.
          Length = 494

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 113 YIMIATVWSLKNNLTSFYASNLQSIQVVPFSYNDP 9
           YI+  ++W+     T  Y++N  S + V F+ N P
Sbjct: 356 YIISPSIWNPTTLKTPSYSTNFTSSETVRFNINLP 390


>U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.
          Length = 532

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 236 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 138
           +C+ +    SVM   I +   C    L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381


>L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine
           transporter protein.
          Length = 532

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 236 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 138
           +C+ +    SVM   I +   C    L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381


>AF101318-11|ABA00165.1|   67|Caenorhabditis elegans Hypothetical
           protein Y73C8C.12 protein.
          Length = 67

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 87  RPHCCNHNVQS 119
           RPHCC +++QS
Sbjct: 47  RPHCCRYSIQS 57


>AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated
           protein 17, isoform a protein.
          Length = 532

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 236 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 138
           +C+ +    SVM   I +   C    L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381


>AF016670-6|AAB66103.2|  839|Caenorhabditis elegans Hypothetical
           protein K02F6.3 protein.
          Length = 839

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 191 IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFYASNLQSIQVVPFS 21
           ++  LECLK K  DSSL  +       I    V +  +  T  +   +  +Q + FS
Sbjct: 534 LITTLECLKDKKFDSSLASDLMKFGSNIRAFGVHAKNDKATISFLDQISKLQNLYFS 590


>AC006675-3|AAK84550.1|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein35 protein.
          Length = 335

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 7/23 (30%), Positives = 18/23 (78%)
 Frame = -1

Query: 70  LVFTLQIYKVFKLFRFHTTIRRH 2
           ++FT +++K+F ++R H + +R+
Sbjct: 113 ILFTSRLFKIFNMYRSHCSWQRY 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,247,247
Number of Sequences: 27780
Number of extensions: 101097
Number of successful extensions: 307
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)