Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c18
         (889 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122211-1|AAM52723.1|  148|Drosophila melanogaster LP07226p pro...    71   2e-12
AF241222-1|AAF67180.1|  148|Drosophila melanogaster mitochondria...    71   2e-12
AE014296-717|AAF47809.1|  148|Drosophila melanogaster CG14981-PA...    71   2e-12
AE014296-716|AAG22242.1|  122|Drosophila melanogaster CG14981-PB...    71   2e-12
AE014297-1208|AAG22141.1|  503|Drosophila melanogaster CG4655-PA...    32   0.92 
AE014296-1023|AAF50736.2|  461|Drosophila melanogaster CG13287-P...    30   4.9  

>AY122211-1|AAM52723.1|  148|Drosophila melanogaster LP07226p
           protein.
          Length = 148

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 34/63 (53%), Positives = 43/63 (68%)
 Frame = -3

Query: 887 RNGTYTGTTNTWSGIKGLYGLSRSVMWVVASSSVILFAPVIFEVERAQVAEMEKSQQKQV 708
           RN     ++ T   +KG Y  S +  W+  +S+VILFAPVIFE ERAQ+ E+ KSQQKQV
Sbjct: 68  RNAVGAVSSATVKSVKGFYSFSCNASWIFFTSAVILFAPVIFETERAQMEELHKSQQKQV 127

Query: 707 LLG 699
           LLG
Sbjct: 128 LLG 130


>AF241222-1|AAF67180.1|  148|Drosophila melanogaster mitochondrial
           import protein protein.
          Length = 148

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 34/63 (53%), Positives = 43/63 (68%)
 Frame = -3

Query: 887 RNGTYTGTTNTWSGIKGLYGLSRSVMWVVASSSVILFAPVIFEVERAQVAEMEKSQQKQV 708
           RN     ++ T   +KG Y  S +  W+  +S+VILFAPVIFE ERAQ+ E+ KSQQKQV
Sbjct: 68  RNAVGAVSSATVKSVKGFYSFSCNASWIFFTSAVILFAPVIFETERAQMEELHKSQQKQV 127

Query: 707 LLG 699
           LLG
Sbjct: 128 LLG 130


>AE014296-717|AAF47809.1|  148|Drosophila melanogaster CG14981-PA,
           isoform A protein.
          Length = 148

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 34/63 (53%), Positives = 43/63 (68%)
 Frame = -3

Query: 887 RNGTYTGTTNTWSGIKGLYGLSRSVMWVVASSSVILFAPVIFEVERAQVAEMEKSQQKQV 708
           RN     ++ T   +KG Y  S +  W+  +S+VILFAPVIFE ERAQ+ E+ KSQQKQV
Sbjct: 68  RNAVGAVSSATVKSVKGFYSFSCNASWIFFTSAVILFAPVIFETERAQMEELHKSQQKQV 127

Query: 707 LLG 699
           LLG
Sbjct: 128 LLG 130


>AE014296-716|AAG22242.1|  122|Drosophila melanogaster CG14981-PB,
           isoform B protein.
          Length = 122

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 34/63 (53%), Positives = 43/63 (68%)
 Frame = -3

Query: 887 RNGTYTGTTNTWSGIKGLYGLSRSVMWVVASSSVILFAPVIFEVERAQVAEMEKSQQKQV 708
           RN     ++ T   +KG Y  S +  W+  +S+VILFAPVIFE ERAQ+ E+ KSQQKQV
Sbjct: 42  RNAVGAVSSATVKSVKGFYSFSCNASWIFFTSAVILFAPVIFETERAQMEELHKSQQKQV 101

Query: 707 LLG 699
           LLG
Sbjct: 102 LLG 104


>AE014297-1208|AAG22141.1|  503|Drosophila melanogaster CG4655-PA,
           isoform A protein.
          Length = 503

 Score = 32.3 bits (70), Expect = 0.92
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 661 HQCHDKLRLSHRISNHLHTDLSHVKHNNVVQHSYQNK 551
           H  H +L+  HR  +H H  L H  H++  QH++QN+
Sbjct: 76  HHHHHRLKQHHRHHHHHHR-LQHHHHHHQQQHNHQNQ 111


>AE014296-1023|AAF50736.2|  461|Drosophila melanogaster CG13287-PA
           protein.
          Length = 461

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 730 KSHNKNRCY*EPTQLWQDPCLRCHQCHDKLRLSHRISNHL 611
           +SH+K+    +P +  ++  LRC  C +  R  H ++ H+
Sbjct: 378 RSHHKSEVACDPNRRKREEKLRCPVCQETFRERHHLTRHM 417


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,126,173
Number of Sequences: 53049
Number of extensions: 647631
Number of successful extensions: 1541
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4332305172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)