Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c18
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025470-5|AAB71053.1|  109|Caenorhabditis elegans Hypothetical ...    57   1e-08
U41026-2|AAM51523.1|  295|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z92782-2|CAB07188.1|  331|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>AF025470-5|AAB71053.1|  109|Caenorhabditis elegans Hypothetical
           protein W10D9.5 protein.
          Length = 109

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 25/58 (43%), Positives = 43/58 (74%), Gaps = 2/58 (3%)
 Frame = -3

Query: 866 TTNTWS--GIKGLYGLSRSVMWVVASSSVILFAPVIFEVERAQVAEMEKSQQKQVLLG 699
           +T  WS  G+KG++ L++S +WVV+++S+I F P I E ER+ + + + +QQ+Q+LLG
Sbjct: 41  STVDWSIWGVKGVFSLTKSTIWVVSTTSLIAFLPYIIEKERSDLEKTQVAQQRQMLLG 98


>U41026-2|AAM51523.1|  295|Caenorhabditis elegans Hypothetical
           protein C28G1.6 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -1

Query: 694 TQLWQDPCLRCHQCHDKLRLSHRISNHLHTDLSHVKHNNVVQHSYQNKVI 545
           ++L+++P ++C  C   + +  R  N+L T+   +K    ++ S +NK I
Sbjct: 35  SKLFENPEVKCPTCRQPIEVKDRDVNNLVTNFGMLKIIREIEESGKNKKI 84


>Z92782-2|CAB07188.1|  331|Caenorhabditis elegans Hypothetical
           protein F14F8.3 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 200 LIKHQYLFCQMK*TRIYRYIFI*TNTLKLLIKACKLVI 313
           LI+  YLFC  +     R  F    +LK L+KACK ++
Sbjct: 276 LIQVSYLFCNKRNVETLRLKF----SLKKLVKACKFIV 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,351,405
Number of Sequences: 27780
Number of extensions: 365923
Number of successful extensions: 842
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)