Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c16
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   271   5e-73
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   268   5e-72
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.5  
09_06_0103 + 20873310-20873382,20873530-20873735                       29   6.1  
06_03_0543 + 21967787-21970261                                         29   6.1  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   8.1  
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119...    28   8.1  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  271 bits (664), Expect = 5e-73
 Identities = 122/193 (63%), Positives = 154/193 (79%)
 Frame = -3

Query: 837 ENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAV 658
           +N +FQME YVYKRR+DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQRAV
Sbjct: 32  KNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAV 91

Query: 657 LKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIAL 478
           LKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA 
Sbjct: 92  LKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAF 151

Query: 477 CNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 298
           C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDP
Sbjct: 152 CDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211

Query: 297 EESEKDEQQAKEQ 259
           EE+++ E++A  Q
Sbjct: 212 EEAKEQEEEAPAQ 224


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  268 bits (656), Expect = 5e-72
 Identities = 120/189 (63%), Positives = 150/189 (79%)
 Frame = -3

Query: 837 ENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAV 658
           +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQRAV
Sbjct: 32  KNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAV 91

Query: 657 LKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIAL 478
           LKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA 
Sbjct: 92  LKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAF 151

Query: 477 CNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 298
           C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDP
Sbjct: 152 CDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211

Query: 297 EESEKDEQQ 271
           EE+++ E++
Sbjct: 212 EEAKEQEEE 220


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 151 TRCSSCFWSTPCSRRMVCPGTR*VEHN 71
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 652 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 545
           +CR+ RC  YC   G    RC +  DPS     ++ +C+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 402 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 313
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 151 TRCSSCFWSTPCSRRMVCPGTR*VEHN 71
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>08_01_0152 -
           1190358-1190462,1190648-1190765,1191134-1192691,
           1193338-1193530
          Length = 657

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 648 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 803
           + SV + D+  ++  RT  RGS  L    QPE + PRY+       H   VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,173,050
Number of Sequences: 37544
Number of extensions: 505349
Number of successful extensions: 1369
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)