Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c15
(818 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 39 0.001
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 34 0.021
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 33 0.049
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.064
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.45
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 29 0.60
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 27 3.2
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 27 3.2
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 5.6
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 26 5.6
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 26 7.4
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 9.8
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 38.7 bits (86), Expect = 0.001
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Frame = +3
Query: 129 SHYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKC----CSKVSFKCRVGSR 296
S+++++SS+T S+ +++ SS S SS K SSS S S K S
Sbjct: 144 SYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSS 203
Query: 297 HWSRTLGSRSSSRVQSKFRRCSLVASRPPLSCSA 398
S++ S SSS+ SKF S + S P S S+
Sbjct: 204 SSSKSSASPSSSKSSSKFSSSSFITSTTPASSSS 237
Score = 29.5 bits (63), Expect = 0.60
Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Frame = +3
Query: 138 LSASSTTISTGLCPTNTFLRISSQYSF-------SSVKLSSSGCPKCCSKVSFKCRVGSR 296
LS S T ST + P+ R SS Y SS SSS P S S S
Sbjct: 121 LSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSS 180
Query: 297 HWSRTLGSRSSSRVQSKFRRCSLVASRPPLSCSA 398
S + S SSS SK S +S+ S S+
Sbjct: 181 SSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSS 214
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 34.3 bits (75), Expect = 0.021
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = -2
Query: 745 VRALXSTVLAELCQNNPFCQEKFLEYGLL-NVLLTLVQSEQGEALVKCLYALSCGCREYS 569
+R++ S VLA NN Q+K LE ++ ++ TL Q L+K L+ LS + +
Sbjct: 119 IRSMSSVVLASALSNNFIAQKKALEMNIMPKIVNTLRQENHPVTLLKKLFLLSKSVQSF- 177
Query: 568 PACRSLVSR 542
P + +S+
Sbjct: 178 PLSEAFISK 186
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 33.1 bits (72), Expect = 0.049
Identities = 27/70 (38%), Positives = 35/70 (50%)
Frame = +3
Query: 117 H*DPSHYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSR 296
H SH S SS+ +T PTNT S+ + S+ SSSG P +K S ++GS
Sbjct: 3722 HNTVSHATSTSSS-FTTSHLPTNTLA--STFDNSQSIFSSSSGVPGLSTKSSSLGKIGSS 3778
Query: 297 HWSRTLGSRS 326
S TL S S
Sbjct: 3779 SISLTLSSSS 3788
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 32.7 bits (71), Expect = 0.064
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Frame = +3
Query: 129 SHYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSR 308
S L++SST +T PT++ L SS S S S++ S ++ S S
Sbjct: 88 SSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSS 147
Query: 309 TLGSRS--SSRVQSKFRRCSLVASRPPLSCSAMVLTTLCWMNCSLASLYWLARYLMRKAA 482
+L S S SS + S S ++ P S ++ L++ N + +S LA +
Sbjct: 148 SLASSSTTSSSLASSSTN-STTSATPTSSATSSSLSSTAASNSATSSS--LASSSLNSTT 204
Query: 483 LVLAEGSSCASAA 521
A SS +S A
Sbjct: 205 SATATSSSLSSTA 217
Score = 25.4 bits (53), Expect = 9.8
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = +3
Query: 129 SHYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSR 308
S L++SST +T PT++ ++ S SS S+S + S + S
Sbjct: 156 SSSLASSSTNSTTSATPTSS----ATSSSLSSTAASNSATSSSLASSSLNSTTSATATSS 211
Query: 309 TLGS--RSSSRVQSKFRRCSLVASRPPLSCSAMVLTTL 416
+L S S+S S SL ++ + S+ + +T+
Sbjct: 212 SLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTV 249
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.9 bits (64), Expect = 0.45
Identities = 32/106 (30%), Positives = 47/106 (44%)
Frame = +3
Query: 126 PSHYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWS 305
P+ S S++ S+ PT+T ISS S SS S+ S SF S S
Sbjct: 283 PTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS--S 340
Query: 306 RTLGSRSSSRVQSKFRRCSLVASRPPLSCSAMVLTTLCWMNCSLAS 443
T+ S SSS S F + +S+ S S+ V ++ + +L S
Sbjct: 341 STISSSSSSPSSSSF-SSTTSSSKSSSSFSSTVSSSSSTSSSTLTS 385
Score = 27.9 bits (59), Expect = 1.8
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 7/183 (3%)
Frame = +3
Query: 141 SASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSG--CPKCCSKVSFKCRVGSRHWSRTL 314
S S++ S+ PT+T ISS S SS S+S S SF + S S +
Sbjct: 271 SIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSS- 329
Query: 315 GSRSSSRVQSKFRRCSLVASRPPLSCSAMVLTTLCWMNCSLASLYWLARYLMRKAALVLA 494
S SSS S S +S P S S T+ + S +S ++ ++ + +
Sbjct: 330 SSFSSSPTSSSSTISS--SSSSPSSSSFSSTTSSSKSSSSFSST--VSSSSSTSSSTLTS 385
Query: 495 EGSSCASAAPNAPHPPRDTSER--HAGEYSRQPHDKAYRH---LTRASPCSDCTRVSRTF 659
SS + A ++ H +S + + + S P A+ H +R+S S +S
Sbjct: 386 SSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLS 445
Query: 660 SRP 668
S+P
Sbjct: 446 SKP 448
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.60
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -3
Query: 225 RKKRSIVKRSSGRCLSGISQWRSWLKKPIDSARGLNESVPNQS 97
R++RS+V + + C+S + WLKK A+G + + N+S
Sbjct: 97 RRRRSVVSKEALSCISLEIPYIKWLKKRKGHAKGESTFLDNRS 139
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 28.3 bits (60), Expect = 1.4
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +3
Query: 141 SASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGS 320
S+SS+ +S+ +++ ++ S SS SSS K S S + SR SRT
Sbjct: 123 SSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSS---KSSSRSSSRTTSH 179
Query: 321 RSSSRVQSKFR 353
R++S S +R
Sbjct: 180 RTTSHKSSSYR 190
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.8
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +3
Query: 141 SASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGS 320
S+SS++ S+ +++ SS S SS SSS S V S H S + S
Sbjct: 166 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSS 225
Query: 321 RSSS 332
SSS
Sbjct: 226 SSSS 229
Score = 27.1 bits (57), Expect = 3.2
Identities = 24/66 (36%), Positives = 30/66 (45%)
Frame = +3
Query: 141 SASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGS 320
S+SSTT +T P+++ SS S SS SSS S S S S + S
Sbjct: 145 SSSSTTTTTS--PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 202
Query: 321 RSSSRV 338
SSS V
Sbjct: 203 SSSSSV 208
Score = 26.2 bits (55), Expect = 5.6
Identities = 26/90 (28%), Positives = 35/90 (38%)
Frame = +3
Query: 141 SASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGS 320
S SS++ S+ +++ SS S SS SSS S S S S
Sbjct: 154 SPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSS 213
Query: 321 RSSSRVQSKFRRCSLVASRPPLSCSAMVLT 410
SSS S S +S P S S+ + T
Sbjct: 214 TSSSHSSSSSSSSSSSSSSRPSSSSSFITT 243
Score = 26.2 bits (55), Expect = 5.6
Identities = 32/97 (32%), Positives = 43/97 (44%)
Frame = +3
Query: 126 PSHYLSASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWS 305
PS S+SS++ S+ +++ SS S SS SSS S S V S
Sbjct: 155 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPIT--S 212
Query: 306 RTLGSRSSSRVQSKFRRCSLVASRPPLSCSAMVLTTL 416
T S SSS S S +SRP S S+ +TT+
Sbjct: 213 STSSSHSSSSSSSS---SSSSSSRP--SSSSSFITTM 244
Score = 25.8 bits (54), Expect = 7.4
Identities = 28/101 (27%), Positives = 41/101 (40%)
Frame = +3
Query: 141 SASSTTISTGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGS 320
S+SS++ S+ +++ SS S SS SSS S S S S + S
Sbjct: 163 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSS 222
Query: 321 RSSSRVQSKFRRCSLVASRPPLSCSAMVLTTLCWMNCSLAS 443
SSS S R S + +S S + T + S +S
Sbjct: 223 SSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSS 263
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 2.4
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = +3
Query: 129 SHYLSASSTTI--STGLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHW 302
S +S+ T++ S+ PT++ SS + S +SSS P S VS +
Sbjct: 528 SSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSP 587
Query: 303 SRTLGSRSSSRVQSKFRRCSLVASRPPLSCSAMVLTTL 416
S T S SSS S F S +S +S S +T+
Sbjct: 588 SSTSLSISSSSTSSTFSSAS-TSSPSSISSSISSSSTI 624
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 637 QSEQGEALVKCLYALSCGCREYSPACRSLV 548
++E+ E +KCL L YSP R+L+
Sbjct: 93 ETEKSECFIKCLLLLILSLGNYSPYSRNLL 122
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 471 RKAALVLAEGSSCASAAPNAPHPPRDTS 554
RK V +EG S A+A NA H P T+
Sbjct: 114 RKIRCVYSEGPSTANAHANAHHQPAQTT 141
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 694 FCQEKFLEYGLLNVLLTLVQSEQGEALVK 608
FC+ K L+YGLLN + EA++K
Sbjct: 120 FCRLKLLDYGLLNESEMVENVSLTEAIIK 148
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = -2
Query: 754 NEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQSEQG-------EALVKCLY 599
+E + + T+LA L Q + C E L ++ LL ++ S++ + L+KCLY
Sbjct: 23 SENLSSSKKTILARLQQFHKLCSEVGLNQHSISSLLDVILSKKTHFDKNHVQLLIKCLY 81
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 304 DQCRDPTLHLKETLEQHLGHPELESFTEEKEY 209
D RD +L + L H HPE E KEY
Sbjct: 106 DLIRDYVDYLLDKLSFHAQHPEFNGTFEYKEY 137
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +3
Query: 498 GSSCASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPCSDCTRVSRTFSRPYSK 677
G A ++ N+ TS + E S + HDK+ + S T+ SRT P+++
Sbjct: 327 GEVSAQSSTNSTSSEESTSVKD--EDSSKIHDKSLKRKHEDDESSTSTKSSRTTKTPFTR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,533
Number of Sequences: 5004
Number of extensions: 56643
Number of successful extensions: 226
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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