Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c15
(818 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0708 + 19648511-19648808,19649189-19649280,19650850-196510... 49 5e-06
03_02_0515 - 9046450-9046996,9047125-9047227,9047319-9047540,904... 41 0.001
03_06_0495 + 34323082-34323173,34323600-34323742,34324265-343243... 40 0.002
08_02_1492 + 27504158-27506098 32 0.63
09_04_0487 - 18014469-18014660,18014935-18015016,18015297-180155... 31 0.83
08_02_0450 - 17266977-17267165,17268017-17268053,17268139-172695... 31 0.83
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 31 1.1
11_06_0703 + 26444128-26446215,26446525-26447226 30 1.9
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 30 1.9
05_03_0669 + 16802158-16802495,16802574-16803906,16803970-16804818 30 1.9
07_01_0054 - 417945-418157 30 2.5
11_04_0167 + 14382976-14385244,14389373-14389842 29 3.4
09_06_0089 + 20781086-20782985,20783463-20783538,20783593-207836... 29 3.4
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 29 4.4
06_03_1189 + 28271185-28271394,28272421-28273326 29 5.9
07_03_0142 - 14251959-14252230,14252244-14252316 28 7.8
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 28 7.8
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 28 7.8
01_05_0224 + 19485296-19485493,19485584-19487817,19487903-194881... 28 7.8
>09_04_0708 +
19648511-19648808,19649189-19649280,19650850-19651000,
19651779-19651906,19652099-19652257,19652325-19652507,
19652978-19653178,19653269-19653289
Length = 410
Score = 48.8 bits (111), Expect = 5e-06
Identities = 27/80 (33%), Positives = 39/80 (48%)
Frame = -2
Query: 814 ANDFYKMGGFAMFPICYGSENEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQ 635
AND K+GG + NE++R + VL + QNN Q + L YG L L+ +
Sbjct: 179 ANDLDKLGGLVAVIQDLNNANEEIRTTSAWVLGKASQNNALVQNQILGYGALARLVKMGY 238
Query: 634 SEQGEALVKCLYALSCGCRE 575
+ E K LYA+S R+
Sbjct: 239 ATSAEEATKALYAISALVRD 258
>03_02_0515 -
9046450-9046996,9047125-9047227,9047319-9047540,
9048350-9048400,9048966-9049168,9049276-9049361
Length = 403
Score = 41.1 bits (92), Expect = 0.001
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 1/133 (0%)
Frame = -2
Query: 814 ANDFYKMGGFAMFPICYGSENEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQ 635
AND + +GG + N ++RA + V+ + QNNP Q+ +E + LL+
Sbjct: 112 ANDLHSVGGLVPVIKYLRNSNARIRARAADVVTTVVQNNPTSQQLVMEASGFDPLLSNFT 171
Query: 634 SEQG-EALVKCLYALSCGCREYSPACRSLVSRXXXXXXXXXXAQDEPSARTKAAFLIRYL 458
S+ A +K L ALS R P + + + KA L YL
Sbjct: 172 SDPDLTARIKALGALSSLIRNNKPGVSAFRLANGYAGLRDALTSESARFQRKALNLTNYL 231
Query: 457 ASQYXDAKEQFIQ 419
S+ F Q
Sbjct: 232 LSESHSGCSVFAQ 244
>03_06_0495 +
34323082-34323173,34323600-34323742,34324265-34324315,
34324405-34324626,34324731-34324833,34325156-34325552,
34326564-34326735,34326995-34327089,34327246-34327455
Length = 494
Score = 39.9 bits (89), Expect = 0.002
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Frame = -2
Query: 814 ANDFYKMGGFAMFPICYGSENEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQ 635
AND + +GG + + +RA + V++ + QNNP Q+ +E L LLT
Sbjct: 94 ANDLHSIGGLDPLLGYLKNSHAGIRAKAAEVVSTIVQNNPKSQQLVMESNGLEPLLTNFS 153
Query: 634 SEQG-EALVKCLYALSCGCREYSPACRSLVSRXXXXXXXXXXAQDEPSARTKAAFLIRYL 458
S+ + K L A+S R P + D+ + KA L++YL
Sbjct: 154 SDASTNSRTKALGAISSLIRHNQPGVAAFRLGNGYSALRDALGSDDARLQRKALHLLQYL 213
>08_02_1492 + 27504158-27506098
Length = 646
Score = 31.9 bits (69), Expect = 0.63
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 1/124 (0%)
Frame = -2
Query: 754 NEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQSEQGEALVKCLYALSCGCRE 575
N + RA + + L ++N +E + LL L++ E AL+ G
Sbjct: 158 NPEARADAAASIVSLARDNDRYGRLIIEEDGVPPLLRLIKEGSSEGQETA--ALAIGLLG 215
Query: 574 YSPACRSLVSRXXXXXXXXXXAQDEP-SARTKAAFLIRYLASQYXDAKEQFIQHNVVRTI 398
P C L+ +D P + A+ + LA+ + ++ F+Q NV+R +
Sbjct: 216 RDPECVELMVLAGVCTAFAKILKDAPMKVQGMVAWAVSELATNHPKCQDAFLQSNVIRLL 275
Query: 397 AEQL 386
L
Sbjct: 276 VSHL 279
>09_04_0487 -
18014469-18014660,18014935-18015016,18015297-18015548,
18015634-18017789
Length = 893
Score = 31.5 bits (68), Expect = 0.83
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 444 LYWLARYLMRKAALVLAEGSSCAS--AAPNAPHPPRDTSERH 563
+ W R ++ AA VLA GSS S AAP P PP S RH
Sbjct: 449 ILWHRRDIILSAA-VLAAGSSTPSSAAAPAPPSPPEPPSPRH 489
>08_02_0450 -
17266977-17267165,17268017-17268053,17268139-17269514,
17285369-17286055,17286146-17286343
Length = 828
Score = 31.5 bits (68), Expect = 0.83
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 444 LYWLARYLMRKAALVLAEGSSCAS--AAPNAPHPPRDTSERH 563
+ W R ++ AA VLA GSS S AAP P PP S RH
Sbjct: 495 ILWHRRDIILSAA-VLAAGSSTPSSAAAPAPPSPPEPPSPRH 535
>04_04_0706 + 27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 234 KVLRKKRSIVKRSSGRCLSGISQWRSWLKKPIDSARGLNESVPNQSCAVDSVFPP 70
++L RS+VKR + L ++ S ++K AR LN S P + VD P
Sbjct: 1499 RMLEHSRSVVKRKALGILCETAKGNSLIQKKQKKARKLNHSTPATALQVDKSSAP 1553
>11_06_0703 + 26444128-26446215,26446525-26447226
Length = 929
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 651 RTFSRPYSKNFSWQNGLF*QSSARTVLXRARTFSFSLP*HIGNI 782
RT+ YSK+ N LF + + VL T S+P HIGN+
Sbjct: 543 RTYRTSYSKSLRVYNPLFKRLTYLRVLDLTGTLVQSIPSHIGNL 586
>10_08_0584 +
18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/75 (29%), Positives = 26/75 (34%)
Frame = +3
Query: 438 ASLYWLARYLMRKAALVLAEGSSCASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTR 617
A L+ LA + RK S AAP AP P + R R H H+
Sbjct: 46 AELFQLADRVARKEEAWTWNSSGSGVAAPAAPGPAARSGRRDRRRKKRSAHSDDEGHVLA 105
Query: 618 ASPCSDCTRVSRTFS 662
S TR R S
Sbjct: 106 VEGASRATRKGRPAS 120
>05_03_0669 + 16802158-16802495,16802574-16803906,16803970-16804818
Length = 839
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/75 (29%), Positives = 26/75 (34%)
Frame = +3
Query: 438 ASLYWLARYLMRKAALVLAEGSSCASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTR 617
A L+ LA + RK S AAP AP P + R R H H+
Sbjct: 151 AELFQLADRVARKEEAWTWNSSGSGVAAPAAPGPTARSGRRDRRRKKRSAHSDDEGHVLA 210
Query: 618 ASPCSDCTRVSRTFS 662
S TR R S
Sbjct: 211 VEGASRATRKGRPAS 225
>07_01_0054 - 417945-418157
Length = 70
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +3
Query: 429 CSLASLYWLARYLMRKAALVLAEGSSCASAAPNAPHP 539
CS+ S W R L K AEG S PN P P
Sbjct: 9 CSVKSKTWNERKLCTKRGTCRAEGFDYGSCYPNRPRP 45
>11_04_0167 + 14382976-14385244,14389373-14389842
Length = 912
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +2
Query: 362 TGRVTTPSQLFSYGPDYIVLDELLFSVXVLAGQVPDEE 475
TG+VTT +++YG ++L E++ VL +PD+E
Sbjct: 758 TGKVTTKVDVYAYG---VILMEMITGRKVLDDSLPDDE 792
>09_06_0089 +
20781086-20782985,20783463-20783538,20783593-20783669,
20784301-20784405,20784601-20784659
Length = 738
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -2
Query: 748 KVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLL 647
KV+A + ++EL N+P CQ+ F + ++ +L+
Sbjct: 243 KVQATVAWAVSELAANHPKCQDAFASHNVIRLLV 276
Score = 28.7 bits (61), Expect = 5.9
Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 1/124 (0%)
Frame = -2
Query: 754 NEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQSEQGEALVKCLYALSCGCRE 575
N RA + L L ++N + +E + LL LV+ + E AL+ G
Sbjct: 158 NLDARADAAASLVSLARDNDRYSKLIIEEDGVPPLLRLVKEGKLEGQENA--ALAIGLLG 215
Query: 574 YSPACRSLVSRXXXXXXXXXXAQDEP-SARTKAAFLIRYLASQYXDAKEQFIQHNVVRTI 398
P C + ++ P + A+ + LA+ + ++ F HNV+R +
Sbjct: 216 RDPECVEQMVHAGACTAFAKVLKEGPMKVQATVAWAVSELAANHPKCQDAFASHNVIRLL 275
Query: 397 AEQL 386
L
Sbjct: 276 VGHL 279
>03_01_0607 +
4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 721 LAELCQNNPFCQEKFLEYGLLNVLLTLVQSEQGEAL 614
LAELC + CQ++ + G+L++L ++ + E L
Sbjct: 701 LAELCSEDGACQKRIADLGVLSLLRRILLGDDYEKL 736
>06_03_1189 + 28271185-28271394,28272421-28273326
Length = 371
Score = 28.7 bits (61), Expect = 5.9
Identities = 27/84 (32%), Positives = 39/84 (46%)
Frame = +3
Query: 300 WSRTLGSRSSSRVQSKFRRCSLVASRPPLSCSAMVLTTLCWMNCSLASLYWLARYLMRKA 479
++R G+ S + RR L R +S +A + ++L W SLA L + Y R+
Sbjct: 162 YTRYSGTWSGRKGVEVSRRTKLNRLRFVVSPAAGMASSLAWAGSSLAPLIY--PYFFRRE 219
Query: 480 ALVLAEGSSCASAAPNAPHPPRDT 551
L L SS AAP + PP T
Sbjct: 220 LLEL--WSSLIMAAPASIVPPGAT 241
>07_03_0142 - 14251959-14252230,14252244-14252316
Length = 114
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 246 TLSW-KVLRKKRSIVKRSSGRCLSGISQWR 160
+L W ++ ++R + +R SGRC G+ WR
Sbjct: 6 SLRWMRMAGRRRWLKRRRSGRCRRGLRSWR 35
>02_05_0481 +
29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 28.3 bits (60), Expect = 7.8
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Frame = +3
Query: 417 CWMNCSLASLYWLARYLMRKAALVLAEG--SSCASAAPNAPHPPRDTSERHAGEYSRQPH 590
CW++ S S+ + +R + L EG +++ N+ + +R +G PH
Sbjct: 284 CWLSISNPSVARIDA--LRSTVIKLREGFRRKGQTSSSNSSDGCGSSVKRSSGSVEAGPH 341
Query: 591 DKAYRHLTRASPCSDCTRVSRTFSRPYSKNFSWQNGLF*QSSARTV 728
A + R++ SDC + P+ ++ S Q G QSS + +
Sbjct: 342 GNATDSMYRSNSQSDCVNWNNV---PFDRSNSCQEG---QSSDKNI 381
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 513 SAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPCSDCTRVSRTFS 662
+AA APHPP+ E A Y R+ +D Y + + A P + + S + S
Sbjct: 94 AAAGAAPHPPQQQREDPA-FYGRRRYDDEYSNNSSARPRRNSSNSSSSSS 142
>01_05_0224 +
19485296-19485493,19485584-19487817,19487903-19488154,
19488235-19488345,19488435-19488516,19488791-19488982
Length = 1022
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Frame = +3
Query: 444 LYWLARYLMRKAALVLAEGSSCAS-------AAPNAPHPPRDTSERH 563
+ W R ++ AA VLA GSS S AAP P PP+ S RH
Sbjct: 536 ILWHRRDIILSAA-VLAAGSSTPSSSQAMTAAAPAPPSPPKPPSPRH 581
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,021,363
Number of Sequences: 37544
Number of extensions: 419966
Number of successful extensions: 1598
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -