Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c15
         (818 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450 CY...    29   0.23 
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    26   1.6  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          23   8.6  

>AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450
           CYP6Y1 protein.
          Length = 504

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = -2

Query: 319 DPRVLDQCRDPTLHLKETLEQHLGHPELESFTEEKEYCEEILRKVFVGHKPVEIVVEEAD 140
           +P V ++ R+    +K+TL+++ G    E+ +E   Y E+ + +    H PV I+   AD
Sbjct: 326 NPEVQERAREC---VKQTLQKYDGKLSYEAVSE-MSYLEQCISETLRKHPPVAILERNAD 381

Query: 139 R 137
           +
Sbjct: 382 K 382


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 246 CPKCCSKVSFKCRVGSRHWSRTLGSRSSSRVQS 344
           CP  CS +SF   +    ++ TL + S SRV S
Sbjct: 740 CPDKCSVISFSHSLSPISFNYTLSNSSLSRVLS 772


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 27/74 (36%), Positives = 28/74 (37%)
 Frame = +3

Query: 195 RISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGSRSSSRVQSKFRRCSLVAS 374
           R S   S S  K S S        VS     GSR  SRT  SRS S+      R S   S
Sbjct: 404 RSSRSRSKSLSKSSRSRSRSLSRSVSRSRSRGSRSRSRTSQSRSRSKT-----RTSRSRS 458

Query: 375 RPPLSCSAMVLTTL 416
           R PL     V   L
Sbjct: 459 RTPLPARGHVRARL 472


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 775,620
Number of Sequences: 2352
Number of extensions: 15144
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86902827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)