Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c15
(818 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec... 32 2.2
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein... 32 2.2
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re... 32 2.2
BC011568-1|AAH11568.1| 461|Homo sapiens SIL1 homolog, endoplasm... 32 2.9
AY358950-1|AAQ89309.1| 461|Homo sapiens SIL1 protein. 32 2.9
AK075177-1|BAC11452.1| 461|Homo sapiens protein ( Homo sapiens ... 32 2.9
AK074624-1|BAC11096.1| 461|Homo sapiens protein ( Homo sapiens ... 32 2.9
AJ299442-1|CAC17773.1| 461|Homo sapiens SIL1 protein protein. 32 2.9
AF547994-1|AAN84477.1| 461|Homo sapiens BiP-associated protein ... 32 2.9
BC115376-1|AAI15377.1| 954|Homo sapiens C2orf16 protein protein. 31 5.0
AL834384-1|CAD39047.1| 845|Homo sapiens hypothetical protein pr... 31 5.0
AC074091-7|AAX93198.1| 939|Homo sapiens unknown protein. 31 5.0
D79995-1|BAA11490.2| 1203|Homo sapiens KIAA0173 protein. 31 6.6
BC021707-1|AAH21707.1| 1199|Homo sapiens tubulin tyrosine ligase... 31 6.6
U10324-1|AAA20994.1| 671|Homo sapiens NF90 protein protein. 30 8.8
>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
(AA -19 to 4525) protein.
Length = 4544
Score = 32.3 bits (70), Expect = 2.2
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Frame = +3
Query: 240 SGCPKCCSKVSFKCRVG---SRHWSRTLGSRSSSRVQSKFRRCSLVASRPPLSC 392
+GC CS FKC G HW+ + C+ A+RPP C
Sbjct: 1009 AGCSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGGC 1062
>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
lipoprotein-related protein 1 (alpha-2-macroglobulin
receptor) protein.
Length = 4544
Score = 32.3 bits (70), Expect = 2.2
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Frame = +3
Query: 240 SGCPKCCSKVSFKCRVG---SRHWSRTLGSRSSSRVQSKFRRCSLVASRPPLSC 392
+GC CS FKC G HW+ + C+ A+RPP C
Sbjct: 1009 AGCSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGGC 1062
>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
protein protein.
Length = 4544
Score = 32.3 bits (70), Expect = 2.2
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Frame = +3
Query: 240 SGCPKCCSKVSFKCRVG---SRHWSRTLGSRSSSRVQSKFRRCSLVASRPPLSC 392
+GC CS FKC G HW+ + C+ A+RPP C
Sbjct: 1009 AGCSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGGC 1062
>BC011568-1|AAH11568.1| 461|Homo sapiens SIL1 homolog, endoplasmic
reticulum chaperone (S. cerevisiae) protein.
Length = 461
Score = 31.9 bits (69), Expect = 2.9
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = -2
Query: 814 ANDFYKMGGFAMFPICYGSENEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQ 635
A D GG + S V+ + VL +NP Q + +E G L LL ++
Sbjct: 219 AQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILA 278
Query: 634 SEQG-EALVKCLYALSCGCREYSPACRSLV 548
+EQ A K L+AL R + A R +
Sbjct: 279 TEQPLTAKKKVLFALCSLLRHFPYAQRQFL 308
>AY358950-1|AAQ89309.1| 461|Homo sapiens SIL1 protein.
Length = 461
Score = 31.9 bits (69), Expect = 2.9
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = -2
Query: 814 ANDFYKMGGFAMFPICYGSENEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQ 635
A D GG + S V+ + VL +NP Q + +E G L LL ++
Sbjct: 219 AQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILA 278
Query: 634 SEQG-EALVKCLYALSCGCREYSPACRSLV 548
+EQ A K L+AL R + A R +
Sbjct: 279 TEQPLTAKKKVLFALCSLLRHFPYAQRQFL 308
>AK075177-1|BAC11452.1| 461|Homo sapiens protein ( Homo sapiens
cDNA FLJ90696 fis, clone PLACE1006809, highly similar to
Endoplasmic reticulum chaperone SIL1, homolog of yeast.
).
Length = 461
Score = 31.9 bits (69), Expect = 2.9
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = -2
Query: 814 ANDFYKMGGFAMFPICYGSENEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQ 635
A D GG + S V+ + VL +NP Q + +E G L LL ++
Sbjct: 219 AQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILA 278
Query: 634 SEQG-EALVKCLYALSCGCREYSPACRSLV 548
+EQ A K L+AL R + A R +
Sbjct: 279 TEQPLTAKKKVLFALCSLLRHFPYAQRQFL 308
>AK074624-1|BAC11096.1| 461|Homo sapiens protein ( Homo sapiens
cDNA FLJ90143 fis, clone HEMBB1001530, highly similar to
Endoplasmic reticulum chaperone SIL1, homolog of yeast.
).
Length = 461
Score = 31.9 bits (69), Expect = 2.9
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = -2
Query: 814 ANDFYKMGGFAMFPICYGSENEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQ 635
A D GG + S V+ + VL +NP Q + +E G L LL ++
Sbjct: 219 AQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILA 278
Query: 634 SEQG-EALVKCLYALSCGCREYSPACRSLV 548
+EQ A K L+AL R + A R +
Sbjct: 279 TEQPLTAKKKVLFALCSLLRHFPYAQRQFL 308
>AJ299442-1|CAC17773.1| 461|Homo sapiens SIL1 protein protein.
Length = 461
Score = 31.9 bits (69), Expect = 2.9
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = -2
Query: 814 ANDFYKMGGFAMFPICYGSENEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQ 635
A D GG + S V+ + VL +NP Q + +E G L LL ++
Sbjct: 219 AQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILA 278
Query: 634 SEQG-EALVKCLYALSCGCREYSPACRSLV 548
+EQ A K L+AL R + A R +
Sbjct: 279 TEQPLTAKKKVLFALCSLLRHFPYAQRQFL 308
>AF547994-1|AAN84477.1| 461|Homo sapiens BiP-associated protein
precursor protein.
Length = 461
Score = 31.9 bits (69), Expect = 2.9
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = -2
Query: 814 ANDFYKMGGFAMFPICYGSENEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQ 635
A D GG + S V+ + VL +NP Q + +E G L LL ++
Sbjct: 219 AQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILA 278
Query: 634 SEQG-EALVKCLYALSCGCREYSPACRSLV 548
+EQ A K L+AL R + A R +
Sbjct: 279 TEQPLTAKKKVLFALCSLLRHFPYAQRQFL 308
>BC115376-1|AAI15377.1| 954|Homo sapiens C2orf16 protein protein.
Length = 954
Score = 31.1 bits (67), Expect = 5.0
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = +1
Query: 655 RSADRTLRTSPGRTDC---SDRAQPGPYXRGH-GPSHFRFHSILET*QTLPSYRSH 810
RS + SP C S+R P R H GPS R HS E PS RSH
Sbjct: 577 RSPSQRNHCSPPERSCHSLSERGLHSPSQRSHRGPSQRRHHSPSERSHRSPSERSH 632
>AL834384-1|CAD39047.1| 845|Homo sapiens hypothetical protein
protein.
Length = 845
Score = 31.1 bits (67), Expect = 5.0
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = +1
Query: 655 RSADRTLRTSPGRTDC---SDRAQPGPYXRGH-GPSHFRFHSILET*QTLPSYRSH 810
RS + SP C S+R P R H GPS R HS E PS RSH
Sbjct: 468 RSPSQRNHCSPPERSCHSLSERGLHSPSQRSHRGPSQRRHHSPSERSHRSPSERSH 523
>AC074091-7|AAX93198.1| 939|Homo sapiens unknown protein.
Length = 939
Score = 31.1 bits (67), Expect = 5.0
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = +1
Query: 655 RSADRTLRTSPGRTDC---SDRAQPGPYXRGH-GPSHFRFHSILET*QTLPSYRSH 810
RS + SP C S+R P R H GPS R HS E PS RSH
Sbjct: 562 RSPSQRNHCSPPERSCHSLSERGLHSPSQRSHRGPSQRRHHSPSERSHRSPSERSH 617
>D79995-1|BAA11490.2| 1203|Homo sapiens KIAA0173 protein.
Length = 1203
Score = 30.7 bits (66), Expect = 6.6
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 453 LARYLMRKAALVLAEGSSCASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPCS 632
LA +++ A +++ SSC+S+ + P P D + Q KAY +LT+ P
Sbjct: 938 LAGFVLPNAEDIISSPSSCSSSTTSLPTSPGDKCRMAPEHVTAQKMKKAY-YLTQKIPDQ 996
Query: 633 D 635
D
Sbjct: 997 D 997
>BC021707-1|AAH21707.1| 1199|Homo sapiens tubulin tyrosine ligase-like
family, member 4 protein.
Length = 1199
Score = 30.7 bits (66), Expect = 6.6
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 453 LARYLMRKAALVLAEGSSCASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPCS 632
LA +++ A +++ SSC+S+ + P P D + Q KAY +LT+ P
Sbjct: 934 LAGFVLPNAEDIISSPSSCSSSTTSLPTSPGDKCRMAPEHVTAQKMKKAY-YLTQKIPDQ 992
Query: 633 D 635
D
Sbjct: 993 D 993
>U10324-1|AAA20994.1| 671|Homo sapiens NF90 protein protein.
Length = 671
Score = 30.3 bits (65), Expect = 8.8
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 495 EGSSCASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPCSDCTRVSR 653
+GSS + + N PP D S+ AGE + + R + RA P SR
Sbjct: 54 KGSSEQAESDNMDVPPEDDSKEGAGEQKTEHMTRTCRGVMRAGPGGQSASYSR 106
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,544,753
Number of Sequences: 237096
Number of extensions: 2377369
Number of successful extensions: 6956
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6937
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10203625794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -