Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c15
(818 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY061359-1|AAL28907.1| 306|Drosophila melanogaster LD28549p pro... 47 4e-05
AE014296-2181|AAF49888.1| 255|Drosophila melanogaster CG10973-P... 47 4e-05
AE014296-2180|ABC66152.1| 306|Drosophila melanogaster CG10973-P... 47 4e-05
AJ252085-1|CAB64597.1| 542|Drosophila melanogaster Importin-alp... 32 1.1
AF074957-1|AAC26055.1| 543|Drosophila melanogaster karyopherin ... 31 1.9
AE014296-3220|AAF49109.1| 543|Drosophila melanogaster CG8548-PA... 31 1.9
AY051453-1|AAK92877.1| 444|Drosophila melanogaster GH11985p pro... 29 5.8
AE014134-907|AAF52238.1| 444|Drosophila melanogaster CG14024-PA... 29 5.8
BT010312-1|AAQ23630.1| 1482|Drosophila melanogaster AT29286p pro... 29 7.6
AY119550-1|AAM50204.1| 1006|Drosophila melanogaster GH27233p pro... 29 7.6
AY119466-1|AAM50120.1| 1132|Drosophila melanogaster GH03957p pro... 29 7.6
AE013599-2417|AAS64827.1| 1520|Drosophila melanogaster CG30460-P... 29 7.6
AE013599-2416|AAS64826.1| 1132|Drosophila melanogaster CG30460-P... 29 7.6
AE013599-2415|AAF57906.3| 1868|Drosophila melanogaster CG30460-P... 29 7.6
>AY061359-1|AAL28907.1| 306|Drosophila melanogaster LD28549p
protein.
Length = 306
Score = 46.8 bits (106), Expect = 4e-05
Identities = 36/140 (25%), Positives = 53/140 (37%), Gaps = 1/140 (0%)
Frame = -2
Query: 799 KMGGFAMFPICYGSENEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQSEQGE 620
K+GG A + +VR +AE+ QNN FCQ + L L + S
Sbjct: 99 KLGGTATLLRYITHSDSEVRESALNTVAEVAQNNVFCQNALINDKFLPALAKNL-SHSNP 157
Query: 619 ALVKC-LYALSCGCREYSPACRSLVSRXXXXXXXXXXAQDEPSARTKAAFLIRYLASQYX 443
V+C LYA+S R + P + K AFLI L S
Sbjct: 158 NTVRCSLYAISSLIRNFQPGYDEFKRIKGIRSLIPCLKSTNTNVYVKTAFLIASLTSIEK 217
Query: 442 DAKEQFIQHNVVRTIAEQLR 383
++ F++ V + E L+
Sbjct: 218 SVRDDFVKEEVFPVLVENLK 237
>AE014296-2181|AAF49888.1| 255|Drosophila melanogaster CG10973-PA,
isoform A protein.
Length = 255
Score = 46.8 bits (106), Expect = 4e-05
Identities = 36/140 (25%), Positives = 53/140 (37%), Gaps = 1/140 (0%)
Frame = -2
Query: 799 KMGGFAMFPICYGSENEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQSEQGE 620
K+GG A + +VR +AE+ QNN FCQ + L L + S
Sbjct: 48 KLGGTATLLRYITHSDSEVRESALNTVAEVAQNNVFCQNALINDKFLPALAKNL-SHSNP 106
Query: 619 ALVKC-LYALSCGCREYSPACRSLVSRXXXXXXXXXXAQDEPSARTKAAFLIRYLASQYX 443
V+C LYA+S R + P + K AFLI L S
Sbjct: 107 NTVRCSLYAISSLIRNFQPGYDEFKRIKGIRSLIPCLKSTNTNVYVKTAFLIASLTSIEK 166
Query: 442 DAKEQFIQHNVVRTIAEQLR 383
++ F++ V + E L+
Sbjct: 167 SVRDDFVKEEVFPVLVENLK 186
>AE014296-2180|ABC66152.1| 306|Drosophila melanogaster CG10973-PB,
isoform B protein.
Length = 306
Score = 46.8 bits (106), Expect = 4e-05
Identities = 36/140 (25%), Positives = 53/140 (37%), Gaps = 1/140 (0%)
Frame = -2
Query: 799 KMGGFAMFPICYGSENEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQSEQGE 620
K+GG A + +VR +AE+ QNN FCQ + L L + S
Sbjct: 99 KLGGTATLLRYITHSDSEVRESALNTVAEVAQNNVFCQNALINDKFLPALAKNL-SHSNP 157
Query: 619 ALVKC-LYALSCGCREYSPACRSLVSRXXXXXXXXXXAQDEPSARTKAAFLIRYLASQYX 443
V+C LYA+S R + P + K AFLI L S
Sbjct: 158 NTVRCSLYAISSLIRNFQPGYDEFKRIKGIRSLIPCLKSTNTNVYVKTAFLIASLTSIEK 217
Query: 442 DAKEQFIQHNVVRTIAEQLR 383
++ F++ V + E L+
Sbjct: 218 SVRDDFVKEEVFPVLVENLK 237
>AJ252085-1|CAB64597.1| 542|Drosophila melanogaster Importin-alpha1
protein.
Length = 542
Score = 31.9 bits (69), Expect = 1.1
Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 1/137 (0%)
Frame = -2
Query: 793 GGFAMFPICYGSENEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQSEQGEAL 614
G +F S ++ V+ L + ++P C++ L G+L LL ++ + +
Sbjct: 180 GAVPIFIDLLSSPHDDVQEQAVWALGNIAGDSPMCRDHLLGSGILEPLLHVLSNSDRITM 239
Query: 613 VK-CLYALSCGCREYSPACRSLVSRXXXXXXXXXXAQDEPSARTKAAFLIRYLASQYXDA 437
++ ++ LS CR SP + ++ + I YL+ D
Sbjct: 240 IRNAVWTLSNLCRGKSPPADFAKISHGLPILARLLKYTDADVQSDTCWAIGYLSDGPNDN 299
Query: 436 KEQFIQHNVVRTIAEQL 386
+ I V R + E L
Sbjct: 300 IQAVIDAGVCRRLVELL 316
>AF074957-1|AAC26055.1| 543|Drosophila melanogaster karyopherin
alpha 1 protein.
Length = 543
Score = 31.1 bits (67), Expect = 1.9
Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 1/137 (0%)
Frame = -2
Query: 793 GGFAMFPICYGSENEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQSEQGEAL 614
G +F S ++ V+ L + ++P C++ L G+L LL ++ + +
Sbjct: 180 GAVPIFIDLLSSPHDDVQEQAVWALGNIAGDSPMCRDHLLGSGILEPLLHVLSNSDRITM 239
Query: 613 VK-CLYALSCGCREYSPACRSLVSRXXXXXXXXXXAQDEPSARTKAAFLIRYLASQYXDA 437
++ ++ LS CR SP + + + I YL+ D
Sbjct: 240 IRNAVWTLSNLCRGKSPPADFAKISHGLPILARLLKYTDADVLSDTCWAIGYLSDGPNDK 299
Query: 436 KEQFIQHNVVRTIAEQL 386
+ I V R + E L
Sbjct: 300 IQAVIDAGVCRRLVELL 316
>AE014296-3220|AAF49109.1| 543|Drosophila melanogaster CG8548-PA
protein.
Length = 543
Score = 31.1 bits (67), Expect = 1.9
Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 1/137 (0%)
Frame = -2
Query: 793 GGFAMFPICYGSENEKVRALXSTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQSEQGEAL 614
G +F S ++ V+ L + ++P C++ L G+L LL ++ + +
Sbjct: 180 GAVPIFIDLLSSPHDDVQEQAVWALGNIAGDSPMCRDHLLGSGILEPLLHVLSNSDRITM 239
Query: 613 VK-CLYALSCGCREYSPACRSLVSRXXXXXXXXXXAQDEPSARTKAAFLIRYLASQYXDA 437
++ ++ LS CR SP + + + I YL+ D
Sbjct: 240 IRNAVWTLSNLCRGKSPPADFAKISHGLPILARLLKYTDADVLSDTCWAIGYLSDGPNDK 299
Query: 436 KEQFIQHNVVRTIAEQL 386
+ I V R + E L
Sbjct: 300 IQAVIDAGVCRRLVELL 316
>AY051453-1|AAK92877.1| 444|Drosophila melanogaster GH11985p
protein.
Length = 444
Score = 29.5 bits (63), Expect = 5.8
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 492 AEGSSCASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRAS 623
A S +S A P PP T+ EYS + H + R L R S
Sbjct: 89 ASAGSSSSQAAAPPPPPPATTLNPVYEYSEELHSRTERELQRRS 132
>AE014134-907|AAF52238.1| 444|Drosophila melanogaster CG14024-PA
protein.
Length = 444
Score = 29.5 bits (63), Expect = 5.8
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 492 AEGSSCASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRAS 623
A S +S A P PP T+ EYS + H + R L R S
Sbjct: 89 ASAGSSSSQAAAPPPPPPATTLNPVYEYSEELHSRTERELQRRS 132
>BT010312-1|AAQ23630.1| 1482|Drosophila melanogaster AT29286p
protein.
Length = 1482
Score = 29.1 bits (62), Expect = 7.6
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +3
Query: 456 ARYLMRKAALVLAEGSS--CASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPC 629
AR +RKAA L+ S+ + AP A P + A + +++ +A PC
Sbjct: 356 ARASLRKAASTLSSNSTPEAPAMAPAASTAPAAPAAP-AAPAAPLVRERSLAKRIKAPPC 414
Query: 630 SDCTRVSRTFS-RPYSKNFSW 689
C RTF+ + + ++ W
Sbjct: 415 DRCPHCDRTFNPKAFDRHVEW 435
>AY119550-1|AAM50204.1| 1006|Drosophila melanogaster GH27233p
protein.
Length = 1006
Score = 29.1 bits (62), Expect = 7.6
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +3
Query: 456 ARYLMRKAALVLAEGSS--CASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPC 629
AR +RKAA L+ S+ + AP A P + A + +++ +A PC
Sbjct: 6 ARASLRKAASTLSSNSTPEAPAMAPAASTAPAAPAAP-AAPAAPLVRERSLAKRIKAPPC 64
Query: 630 SDCTRVSRTFS-RPYSKNFSW 689
C RTF+ + + ++ W
Sbjct: 65 DRCPHCDRTFNPKAFDRHVEW 85
>AY119466-1|AAM50120.1| 1132|Drosophila melanogaster GH03957p
protein.
Length = 1132
Score = 29.1 bits (62), Expect = 7.6
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +3
Query: 456 ARYLMRKAALVLAEGSS--CASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPC 629
AR +RKAA L+ S+ + AP A P + A + +++ +A PC
Sbjct: 6 ARASLRKAASTLSSNSTPEAPAMAPAASTAPAAPAAP-AAPAAPLVRERSLAKRIKAPPC 64
Query: 630 SDCTRVSRTFS-RPYSKNFSW 689
C RTF+ + + ++ W
Sbjct: 65 DRCPHCDRTFNPKAFDRHVEW 85
>AE013599-2417|AAS64827.1| 1520|Drosophila melanogaster CG30460-PA,
isoform A protein.
Length = 1520
Score = 29.1 bits (62), Expect = 7.6
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +3
Query: 456 ARYLMRKAALVLAEGSS--CASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPC 629
AR +RKAA L+ S+ + AP A P + A + +++ +A PC
Sbjct: 6 ARASLRKAASTLSSNSTPEAPAMAPAASTAPAAPAAP-AAPAAPLVRERSLAKRIKAPPC 64
Query: 630 SDCTRVSRTFS-RPYSKNFSW 689
C RTF+ + + ++ W
Sbjct: 65 DRCPHCDRTFNPKAFDRHVEW 85
>AE013599-2416|AAS64826.1| 1132|Drosophila melanogaster CG30460-PB,
isoform B protein.
Length = 1132
Score = 29.1 bits (62), Expect = 7.6
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +3
Query: 456 ARYLMRKAALVLAEGSS--CASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPC 629
AR +RKAA L+ S+ + AP A P + A + +++ +A PC
Sbjct: 6 ARASLRKAASTLSSNSTPEAPAMAPAASTAPAAPAAP-AAPAAPLVRERSLAKRIKAPPC 64
Query: 630 SDCTRVSRTFS-RPYSKNFSW 689
C RTF+ + + ++ W
Sbjct: 65 DRCPHCDRTFNPKAFDRHVEW 85
>AE013599-2415|AAF57906.3| 1868|Drosophila melanogaster CG30460-PC,
isoform C protein.
Length = 1868
Score = 29.1 bits (62), Expect = 7.6
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +3
Query: 456 ARYLMRKAALVLAEGSS--CASAAPNAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPC 629
AR +RKAA L+ S+ + AP A P + A + +++ +A PC
Sbjct: 354 ARASLRKAASTLSSNSTPEAPAMAPAASTAPAAPAAP-AAPAAPLVRERSLAKRIKAPPC 412
Query: 630 SDCTRVSRTFS-RPYSKNFSW 689
C RTF+ + + ++ W
Sbjct: 413 DRCPHCDRTFNPKAFDRHVEW 433
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,383,395
Number of Sequences: 53049
Number of extensions: 694840
Number of successful extensions: 2645
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2645
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3860063376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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