Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c15
(818 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-14|CAB11553.1| 524|Caenorhabditis elegans Hypothetical p... 29 4.0
Z81527-16|CAB04280.1| 915|Caenorhabditis elegans Hypothetical p... 29 5.3
Z81527-15|CAB04279.1| 927|Caenorhabditis elegans Hypothetical p... 29 5.3
Z81110-8|CAB03263.1| 915|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z81110-7|CAB03262.1| 927|Caenorhabditis elegans Hypothetical pr... 29 5.3
U64852-2|ABH03524.1| 975|Caenorhabditis elegans Uncoordinated p... 29 5.3
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p... 29 5.3
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ... 29 5.3
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein. 29 5.3
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 28 9.2
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 28 9.2
AF068721-1|AAC19263.1| 369|Caenorhabditis elegans Hypothetical ... 28 9.2
AC006684-10|AAF39962.2| 665|Caenorhabditis elegans Hypothetical... 28 9.2
>Z98866-14|CAB11553.1| 524|Caenorhabditis elegans Hypothetical
protein Y49E10.17 protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.0
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +3
Query: 144 ASSTTISTGLCPTNTFLRISSQYSF-SSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGS 320
+S T+ ST C + ISS S+ SSG S S + GS S +
Sbjct: 79 SSKTSSSTVSCTSLGSSNISSSSRQPSNGSFRSSGSSNGSSSSSRRSSNGSSSSSGSTSD 138
Query: 321 RSSSRVQSKFRRCSLVASRPPLSCSAMVLTTL 416
SSS + S RR S +SR S S ++++
Sbjct: 139 NSSSNISSSSRRSSNGSSRSSSSSSVGSMSSI 170
>Z81527-16|CAB04280.1| 915|Caenorhabditis elegans Hypothetical
protein T01D3.6b protein.
Length = 915
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Frame = -2
Query: 790 GFAMFPICYGSENEKVRALXSTVLAELCQNNPF-CQE--KFLEYGLLNVLLTLVQSEQGE 620
G F C G N+ + + ++C+N F C E FL+Y L L + ++
Sbjct: 422 GLGTFGACQGLGNDTLEDFYYNCIYDICRNPAFKCTEFTYFLQYCQL-ALPQVAMNQNWR 480
Query: 619 ALVKCLYALSCGCREYSPACRS 554
A + C L+C + C S
Sbjct: 481 AQINC--PLACPLNAHPSTCTS 500
>Z81527-15|CAB04279.1| 927|Caenorhabditis elegans Hypothetical
protein T01D3.6a protein.
Length = 927
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Frame = -2
Query: 790 GFAMFPICYGSENEKVRALXSTVLAELCQNNPF-CQE--KFLEYGLLNVLLTLVQSEQGE 620
G F C G N+ + + ++C+N F C E FL+Y L L + ++
Sbjct: 434 GLGTFGACQGLGNDTLEDFYYNCIYDICRNPAFKCTEFTYFLQYCQL-ALPQVAMNQNWR 492
Query: 619 ALVKCLYALSCGCREYSPACRS 554
A + C L+C + C S
Sbjct: 493 AQINC--PLACPLNAHPSTCTS 512
>Z81110-8|CAB03263.1| 915|Caenorhabditis elegans Hypothetical
protein T01D3.6b protein.
Length = 915
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Frame = -2
Query: 790 GFAMFPICYGSENEKVRALXSTVLAELCQNNPF-CQE--KFLEYGLLNVLLTLVQSEQGE 620
G F C G N+ + + ++C+N F C E FL+Y L L + ++
Sbjct: 422 GLGTFGACQGLGNDTLEDFYYNCIYDICRNPAFKCTEFTYFLQYCQL-ALPQVAMNQNWR 480
Query: 619 ALVKCLYALSCGCREYSPACRS 554
A + C L+C + C S
Sbjct: 481 AQINC--PLACPLNAHPSTCTS 500
>Z81110-7|CAB03262.1| 927|Caenorhabditis elegans Hypothetical
protein T01D3.6a protein.
Length = 927
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Frame = -2
Query: 790 GFAMFPICYGSENEKVRALXSTVLAELCQNNPF-CQE--KFLEYGLLNVLLTLVQSEQGE 620
G F C G N+ + + ++C+N F C E FL+Y L L + ++
Sbjct: 434 GLGTFGACQGLGNDTLEDFYYNCIYDICRNPAFKCTEFTYFLQYCQL-ALPQVAMNQNWR 492
Query: 619 ALVKCLYALSCGCREYSPACRS 554
A + C L+C + C S
Sbjct: 493 AQINC--PLACPLNAHPSTCTS 512
>U64852-2|ABH03524.1| 975|Caenorhabditis elegans Uncoordinated
protein 83, isoform b protein.
Length = 975
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 186 CLSGI-SQWRSWLKKPIDSARGLNESVPNQSCAVDSVFPPNLVGPPTAEERV 34
C+ I +W + + + E + +Q + DS P+LVGPP R+
Sbjct: 138 CVDAIRKRWHTIYLNSLSLVCRIEELINHQQASEDSESDPDLVGPPIKRARI 189
>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
protein 83, isoform a protein.
Length = 1041
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 186 CLSGI-SQWRSWLKKPIDSARGLNESVPNQSCAVDSVFPPNLVGPPTAEERV 34
C+ I +W + + + E + +Q + DS P+LVGPP R+
Sbjct: 204 CVDAIRKRWHTIYLNSLSLVCRIEELINHQQASEDSESDPDLVGPPIKRARI 255
>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
protein Y43D4A.5 protein.
Length = 1648
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 655 RSADRT-LRTSPGRTDCSDRAQPGPYXRGHGPSHF 756
RSA L+ SPG S A P + GH PS F
Sbjct: 778 RSAQSAQLQASPGSVGSSSNAGPVSFGSGHAPSEF 812
>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
Length = 1041
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 186 CLSGI-SQWRSWLKKPIDSARGLNESVPNQSCAVDSVFPPNLVGPPTAEERV 34
C+ I +W + + + E + +Q + DS P+LVGPP R+
Sbjct: 204 CVDAIRKRWHTIYLNSLSLVCRIEELINHQQASEDSESDPDLVGPPIKRARI 255
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 525 NAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPCSDCTRVS-----RTFSRPYSKN 680
+A H P T E + +R P YR + RASP S R RT S P S++
Sbjct: 1715 SADHNPHQT-EHLLAQDNRSPSSPRYRSMARASPPSPAERYGHPPRYRTESPPSSRS 1770
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 525 NAPHPPRDTSERHAGEYSRQPHDKAYRHLTRASPCSDCTRVS-----RTFSRPYSKN 680
+A H P T E + +R P YR + RASP S R RT S P S++
Sbjct: 1715 SADHNPHQT-EHLLAQDNRSPSSPRYRSMARASPPSPAERYGHPPRYRTESPPSSRS 1770
>AF068721-1|AAC19263.1| 369|Caenorhabditis elegans Hypothetical
protein ZK1055.5 protein.
Length = 369
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 295 RDPTLHLKETLEQHLGHPELESFTEE 218
RDPT++L++ + H+G F EE
Sbjct: 47 RDPTIYLRQNVHTHIGDISFLEFREE 72
>AC006684-10|AAF39962.2| 665|Caenorhabditis elegans Hypothetical
protein T02H6.2 protein.
Length = 665
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 304 DQCRDPTLHLKETLEQHLGHPELESFTEEKEYCEEILRKVFVGHKPVE 161
D DPT ++KE LE+++ + ++F E KE E +K K VE
Sbjct: 499 DTKTDPTTNIKEFLERNM-YNAAKNFNEFKESIENREKKEAEARKKVE 545
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,132,193
Number of Sequences: 27780
Number of extensions: 339595
Number of successful extensions: 1136
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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