Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c13
(842 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 31 0.20
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 30 0.36
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 30 0.47
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.1
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.4
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 28 1.4
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.3
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 4.4
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 27 4.4
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 5.8
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 5.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.8
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.8
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce... 26 5.8
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 7.7
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 31.1 bits (67), Expect = 0.20
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = -1
Query: 632 AISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLG 453
A+ AT T S+NP T I N + K F+ PP++++ P +L P+S
Sbjct: 683 ALPATVTTSANPLGFKSTIQRPIPIKNNEDSDSCKAFSQA--PPIATKKPPTFLKPNSPE 740
Query: 452 MAKGVSP 432
AK V P
Sbjct: 741 YAKTVIP 747
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 30.3 bits (65), Expect = 0.36
Identities = 20/77 (25%), Positives = 30/77 (38%)
Frame = -1
Query: 647 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 468
+PPS A+ + + P P P + + NP TP+ P + A + L
Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF-SPINPYYAKSWNHTASAPLLP 303
Query: 467 PSSLGMAKGVSPPYFQV 417
P G+ G PY V
Sbjct: 304 P---GLKNGSDYPYLSV 317
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.9 bits (64), Expect = 0.47
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -1
Query: 641 PSPAISATSTRSSN---PRFHTPTTPDLTSIS-INPLTPY*KEFAPGLKP 504
P P+IS T+T SS H PTTPD ++ + L P +P KP
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEPQPPSGSPSKKP 322
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -1
Query: 644 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP 483
PP PA ++++ SS+P T +T TS SI P P + PP SS P
Sbjct: 370 PPPPASTSSTGTSSSPLLST-STSCTTSTSIPPTGNSTTPVTPTV-PPTSSSTP 421
Score = 28.3 bits (60), Expect = 1.4
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = -1
Query: 644 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 465
PP PA ++++ SS+P + +T TS SI P P + PP S+ + S P
Sbjct: 316 PPPPASTSSTGTSSSP-LPSTSTSCTTSTSIPPTGNSTTPVTPTV-PPTSTSSTSTPPPP 373
Query: 464 SSLGMAKGVSPPYFQVNDESQASRLI 387
+S S P + S I
Sbjct: 374 ASTSSTGTSSSPLLSTSTSCTTSTSI 399
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 38 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 166
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.4
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = -1
Query: 638 SPAISATSTRSS-NPRFHTPTTPDLTSISINPLTP-----Y*KEFAPGLKPPLSSEAPSA 477
SP +SA S +P P+TP + SI+P TP Y + A L PLS + +A
Sbjct: 284 SPELSADKVLSHCSPIDARPSTPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVGSTTA 343
Query: 476 YL 471
YL
Sbjct: 344 YL 345
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 193 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 98
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -2
Query: 292 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 113
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 112 LSASIQASLPSSEIYRQL 59
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 638 SPAISATSTRSSNPRFHTPTTPDLTSIS 555
S IS +ST N FH PT TS S
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSS 828
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = -3
Query: 837 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 748
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 4.4
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Frame = -1
Query: 650 IKPPSPAISATSTRSSNPRFHTP----TTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP 483
+ +P S+T+ +S P + +TP +S ++N TP P++S
Sbjct: 1578 VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 1637
Query: 482 SAYLTPSSLGMAKGVSPP 429
TP + A SPP
Sbjct: 1638 LNSSTPITSSTALNTSPP 1655
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 26.6 bits (56), Expect = 4.4
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -1
Query: 647 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 468
+PPSP I R+S F +PT S+ + + G+ P SS A A+L+
Sbjct: 494 RPPSPGIVTPPQRTSPSFFVSPTESTRQSLDSRRSFEHSTSSSSGISPSHSS-ASLAHLS 552
Query: 467 PSS 459
+S
Sbjct: 553 QAS 555
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -1
Query: 632 AISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSS 459
A+ ++ S F PTT S+SI+P K A +P + ++ S TP++
Sbjct: 69 AVETNASASHETSFALPTTSPAASLSISPT----KSAAVSSEPNVEADVKSLSSTPAA 122
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.2 bits (55), Expect = 5.8
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = -1
Query: 641 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSEAPSAYLTP 465
P ++S+ FHTPT P T +S +P + + PLS +A S LT
Sbjct: 123 PPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTS 180
Query: 464 SSLGMAKGVSPPYFQVNDESQA 399
S L + SPP V +S +
Sbjct: 181 SPLKDFQS-SPPLSTVLQKSHS 201
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.8
Identities = 22/69 (31%), Positives = 27/69 (39%)
Frame = -1
Query: 635 PAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSL 456
P I S+ SS P P P + PL P + P PP APS P L
Sbjct: 325 PPIGNGSSNSSLPP--PPPPPRSNAAGSIPLPPQGRSAPP---PPPPRSAPSTGRQPPPL 379
Query: 455 GMAKGVSPP 429
++ VS P
Sbjct: 380 SSSRAVSNP 388
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 403 KLRALLVVIPRILRSPPPTHPLIEDV 326
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 170
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 91 SLPSSEIYRQLVDSRHVSSDSFGVY 17
+L S I+R + S HVSS S GVY
Sbjct: 2 TLLDSSIFRFRLSSLHVSSRSLGVY 26
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 27 KESEETWRESTNWR*ISEEG 86
KE E W + NW+ SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,326,905
Number of Sequences: 5004
Number of extensions: 69274
Number of successful extensions: 311
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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