Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c13
         (842 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    26   1.6  
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    26   1.6  
AF283275-1|AAG15376.1|  133|Anopheles gambiae small heat shock p...    24   5.0  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   6.7  

>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1977

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 158  VRQHQDGS*GQQNCSSLCIYSSFSPFLRDLPPVGRFSPCFFRL 30
            +R+H   S GQ  C+    Y++  P  R   PV    PC+ R+
Sbjct: 1822 LRKHHCRSCGQIFCAECSDYTAHLPEERLYQPVRLCGPCYQRI 1864


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1978

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 158  VRQHQDGS*GQQNCSSLCIYSSFSPFLRDLPPVGRFSPCFFRL 30
            +R+H   S GQ  C+    Y++  P  R   PV    PC+ R+
Sbjct: 1823 LRKHHCRSCGQIFCAECSDYTAHLPEERLYQPVRLCGPCYQRI 1865


>AF283275-1|AAG15376.1|  133|Anopheles gambiae small heat shock
           protein protein.
          Length = 133

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 4   IKILRRLQRSRKKHGENLPTGGRSRRKGEKLE 99
           I I    Q  ++  G+  P  G S+++GEK+E
Sbjct: 101 IPITHTGQPMKQVTGKAAPENGHSKKEGEKME 132


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -2

Query: 667 RSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*H 563
           + RP  S  PP+ S   Q   Q    +H P  + H
Sbjct: 68  QKRPVTSPAPPVLSSSAQQQQQQQQLLHHPSSSPH 102



 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 649 SSHPPLRSRLHQPDHQIPDSIHQPPQT*HP 560
           SSH P+ +  H   H    +  QPP   HP
Sbjct: 807 SSHSPVGAGSHHLHHLHHHAAQQPPPGSHP 836


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 837,650
Number of Sequences: 2352
Number of extensions: 16831
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 89305416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)