Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c08
         (830 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21917-1|AAA73920.1|  271|Anopheles gambiae serine protease prot...    29   0.23 
EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.       27   0.93 
AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         25   3.7  
AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled ...    24   6.5  
EF065522-1|ABK59322.1|  255|Anopheles gambiae beta carbonic anhy...    23   8.6  

>U21917-1|AAA73920.1|  271|Anopheles gambiae serine protease
           protein.
          Length = 271

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +1

Query: 577 LPCVTDQQCRDNCVISSAASELT--CQDGFCNATN---ALLNAQ 693
           LP V DQQCRD   IS+     T    +G CN  +   A+LN Q
Sbjct: 191 LPVVADQQCRDPTGISTGLICFTSPVNNGACNGDSGGPAILNNQ 234


>EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.
          Length = 661

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 525 RWRFQLVNA--HVCILQNKILNKFKRVHVND*YNYQ*NK 415
           R+RF+ +NA  HVC LQ +I +    V  +D ++ Q  K
Sbjct: 282 RFRFRFINAASHVCPLQLQIEDHMMEVIASDSFHLQPRK 320


>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 134 GPKSAAKHGHGSVGK 90
           GP+ A +H H SVGK
Sbjct: 73  GPRPAVRHLHSSVGK 87


>AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled
           receptor 4 protein.
          Length = 426

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 22  CNYQLSHILFCITIQRC 72
           C Y  S++L C+++ RC
Sbjct: 160 CLYLSSNVLVCVSLDRC 176


>EF065522-1|ABK59322.1|  255|Anopheles gambiae beta carbonic
           anhydrase protein.
          Length = 255

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = +1

Query: 613 CVISSAASELTCQDGFCNATNALLNAQAPDLIECD 717
           CV+++    + C    C A N L   + P+    D
Sbjct: 89  CVVNNIKHIIVCGHSDCKAMNLLYKLKDPEFASLD 123


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 951,388
Number of Sequences: 2352
Number of extensions: 20625
Number of successful extensions: 33
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 87651612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)