Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c08
         (830 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY128492-1|AAM75085.1|  387|Drosophila melanogaster RH41996p pro...    29   7.8  
AE014298-1306|AAF46466.1|  387|Drosophila melanogaster CG12120-P...    29   7.8  

>AY128492-1|AAM75085.1|  387|Drosophila melanogaster RH41996p
           protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +1

Query: 79  CILNFPTLPCP---CFAADFGPTPQRPNNRHCNTSHLQL 186
           C +NF  L  P   C+  +  P+P R N  H N   + L
Sbjct: 243 CSINFTFLADPRQMCYNVEMAPSPDRKNESHLNIKEVPL 281


>AE014298-1306|AAF46466.1|  387|Drosophila melanogaster CG12120-PA
           protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +1

Query: 79  CILNFPTLPCP---CFAADFGPTPQRPNNRHCNTSHLQL 186
           C +NF  L  P   C+  +  P+P R N  H N   + L
Sbjct: 243 CSINFTFLADPRQMCYNVEMAPSPDRKNESHLNIKEVPL 281


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,747,018
Number of Sequences: 53049
Number of extensions: 895317
Number of successful extensions: 2284
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2284
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3942192384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)