Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c08
(830 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022967-2|AAB69880.1| 305|Caenorhabditis elegans Hypothetical ... 31 0.77
AC006603-2|AAF39746.2| 507|Caenorhabditis elegans Hypothetical ... 31 1.0
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (... 30 1.8
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (... 30 1.8
AF039041-5|AAB94187.1| 128|Caenorhabditis elegans Hypothetical ... 30 2.3
U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical p... 29 3.1
Z99280-3|CAE18018.1| 215|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical p... 28 7.1
Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical p... 28 7.1
>AF022967-2|AAB69880.1| 305|Caenorhabditis elegans Hypothetical
protein C13A2.9 protein.
Length = 305
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 322 GLYNSASAEFIFNIMHLTANVLLVPNALKKRDVKYIYNTY 203
GL+ S IFN L A++LL+ N +K K I+N +
Sbjct: 12 GLFRKCSFRRIFNFAFLGASILLLYNFMKPNTSKAIFNAF 51
>AC006603-2|AAF39746.2| 507|Caenorhabditis elegans Hypothetical
protein B0524.3 protein.
Length = 507
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 707 IKSGACAFSKALVALQKPSWQVNSLAALEITQ 612
+K A KAL +L+K SWQV+SL L Q
Sbjct: 192 VKGQAHRLEKALASLEKVSWQVSSLLGLPAIQ 223
>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform b protein.
Length = 1069
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 532 FTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 663
F QHN V + +P +C D+C S + +DG C
Sbjct: 33 FVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76
>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform a protein.
Length = 1065
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 532 FTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 663
F QHN V + +P +C D+C S + +DG C
Sbjct: 33 FVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76
>AF039041-5|AAB94187.1| 128|Caenorhabditis elegans Hypothetical
protein W03F8.6a protein.
Length = 128
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +1
Query: 529 NFTFQHNRGVDCSLNRLPCVTDQQC-RDNCVISSAASELTCQDGFCNATNALLNAQAPDL 705
++ +H +G D C +C D C+ C D CN++N L+ A L
Sbjct: 60 SYVRRHKKGDDSYTITKSCGEVGKCFEDGCIGPGDEKNCCCSDNMCNSSNGLIYPTAGIL 119
Query: 706 I 708
I
Sbjct: 120 I 120
>U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical
protein K06C4.8 protein.
Length = 355
Score = 29.5 bits (63), Expect = 3.1
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = -2
Query: 349 CLVAQKINLGLYNSASAEF-IFNIMHLTANVLLVPNALKKRDVKYIYNTYLKNY-SVIEG 176
C + INL +N +F IF I+H +NVLLV +IY + + Y +V+
Sbjct: 260 CTSVKFINLFSHNYVQFQFVIFKIIHHISNVLLV---FYSASTFFIYLIFSEKYRNVLST 316
Query: 175 AMCC-NGDCLAVVVLDRNQLQNT 110
+ C N D L V R + T
Sbjct: 317 CVTCRNTDELTVSSRGRQNTKTT 339
>Z99280-3|CAE18018.1| 215|Caenorhabditis elegans Hypothetical
protein Y57G11B.7 protein.
Length = 215
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 79 CILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 180
CILNF LP A T PN+ HC+ +L
Sbjct: 3 CILNFLLLPLVVLAQSSCDTDGIPNHLHCSIKNL 36
>Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = -2
Query: 262 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 95
+ L N L+ R V I+NT L + ++ GD L + +L+ +L N ++ L
Sbjct: 92 ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151
Query: 94 -ESLEYTSDNVELLCKKVCVIV 32
++ +N L +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173
>Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = -2
Query: 262 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 95
+ L N L+ R V I+NT L + ++ GD L + +L+ +L N ++ L
Sbjct: 92 ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151
Query: 94 -ESLEYTSDNVELLCKKVCVIV 32
++ +N L +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,362,654
Number of Sequences: 27780
Number of extensions: 459434
Number of successful extensions: 1151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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