Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c07
(866 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99283-7|CAB16537.2| 985|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z92782-14|CAI46605.1| 985|Caenorhabditis elegans Hypothetical p... 31 0.81
U55372-1|AAA98002.2| 816|Caenorhabditis elegans Hypothetical pr... 31 1.1
U41029-3|AAF99952.2| 886|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical ... 31 1.1
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ... 31 1.1
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ... 31 1.1
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ... 31 1.1
U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine rec... 31 1.4
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 30 2.5
U55372-2|AAA98001.1| 980|Caenorhabditis elegans Hypothetical pr... 30 2.5
U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81543-1|CAB04423.2| 543|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z79603-8|CAH04750.1| 137|Caenorhabditis elegans Hypothetical pr... 29 5.7
EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c pro... 29 5.7
EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b pro... 29 5.7
AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical ... 29 5.7
AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical ... 29 5.7
AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical ... 29 5.7
AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical... 28 9.9
AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical... 28 9.9
AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine re... 28 9.9
>Z99283-7|CAB16537.2| 985|Caenorhabditis elegans Hypothetical
protein Y70C5C.1 protein.
Length = 985
Score = 31.5 bits (68), Expect = 0.81
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 513 LITEEEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 409
++ E Q+ D ++Y LQ H++GCV V + G
Sbjct: 731 ILRREIQLNNGDEYIYRHLQTTHDVGCVQVTYQIG 765
>Z92782-14|CAI46605.1| 985|Caenorhabditis elegans Hypothetical
protein Y70C5C.1 protein.
Length = 985
Score = 31.5 bits (68), Expect = 0.81
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 513 LITEEEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 409
++ E Q+ D ++Y LQ H++GCV V + G
Sbjct: 731 ILRREIQLNNGDEYIYRHLQTTHDVGCVQVTYQIG 765
>U55372-1|AAA98002.2| 816|Caenorhabditis elegans Hypothetical
protein C02G6.2 protein.
Length = 816
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 501 EEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 409
E Q+ D ++Y LQ+ H+ GCV V + +G
Sbjct: 751 EFQLNNGDEYIYRHLQKTHDAGCVEVTFKFG 781
>U41029-3|AAF99952.2| 886|Caenorhabditis elegans Hypothetical
protein F47G3.1 protein.
Length = 886
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = -3
Query: 672 PVLGHMCVLSNKPPMYSFLKEWFLLPHYKVVSLKSESLTWGFPHVVVFDLDSTLITEEEQ 493
P+ GH+ ++ K + + +P Y V + + +TW F DST +T+ +
Sbjct: 155 PIEGHVHIIPIKNNAVRLVPDLKYMPKYDYVEPEKKIMTWAFVDSCTALNDSTKLTDYSE 214
Query: 492 IQI--RDSFVY 466
+ + R +FV+
Sbjct: 215 VGVDSRATFVF 225
>AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical
protein F44E7.4d protein.
Length = 984
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 501 EEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 409
E Q+ D +VY LQ+ H++GCV V + G
Sbjct: 810 ELQLNNGDEYVYRHLQKTHDVGCVEVTYQIG 840
>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
protein F44E7.4c protein.
Length = 1008
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 501 EEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 409
E Q+ D +VY LQ+ H++GCV V + G
Sbjct: 751 ELQLNNGDEYVYRHLQKTHDVGCVEVTYQIG 781
>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
protein F44E7.4a protein.
Length = 1067
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 501 EEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 409
E Q+ D +VY LQ+ H++GCV V + G
Sbjct: 810 ELQLNNGDEYVYRHLQKTHDVGCVEVTYQIG 840
>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
protein F44E7.4b protein.
Length = 1051
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 501 EEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 409
E Q+ D +VY LQ+ H++GCV V + G
Sbjct: 794 ELQLNNGDEYVYRHLQKTHDVGCVEVTYQIG 824
>U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine
receptor, class w protein71 protein.
Length = 353
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +1
Query: 10 YQVVDYLFVIIVPVAHRGGASFDFDVEIVRVIISWQIVDKC 132
++V ++F+I +P++ A F F E+++ +S+Q DKC
Sbjct: 141 FKVGLFIFLIFIPISFLVSALFYFGKELIKKQLSFQPGDKC 181
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 803 FNFATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVC--LATNRQ 630
FNF T + + T+ + P TTC +GT+LN ++ Q TC C L +Q
Sbjct: 280 FNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTLLNVANQGQ---TCFCSELFNGKQ 336
Query: 629 C 627
C
Sbjct: 337 C 337
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 803 FNFATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVC--LATNRQ 630
FNF T + + T+ + P TTC +GT+LN ++ Q TC C L +Q
Sbjct: 280 FNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTLLNVANQGQ---TCFCSELFNGKQ 336
Query: 629 C 627
C
Sbjct: 337 C 337
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 803 FNFATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVC--LATNRQ 630
FNF T + + T+ + P TTC +GT+LN ++ Q TC C L +Q
Sbjct: 280 FNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTLLNVANQGQ---TCFCSELFNGKQ 336
Query: 629 C 627
C
Sbjct: 337 C 337
>U55372-2|AAA98001.1| 980|Caenorhabditis elegans Hypothetical
protein C02G6.1 protein.
Length = 980
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 501 EEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 409
E Q+ D ++Y LQ+ H+ GCV V + G
Sbjct: 724 EFQLNNGDEYIYRHLQKTHDAGCVEVTYQIG 754
>U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical
protein W06B4.2 protein.
Length = 521
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 6 TLSSCRLSVRDNCASRAQGWG 68
T SSCRL +RD A GWG
Sbjct: 319 TGSSCRLKIRDGSVKGAGGWG 339
>Z81543-1|CAB04423.2| 543|Caenorhabditis elegans Hypothetical
protein F49B2.1 protein.
Length = 543
Score = 29.1 bits (62), Expect = 4.3
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 477 SFVYDSLQELHEM-GCVLVLWSYGSRDHVAHSMRDA-DLEGYFDIIISEGSTVREERSDL 304
SF +DS Q E G S+GS D ++ SMR A L DII EG + +S L
Sbjct: 123 SFDHDSEQFCKEFEGLKFRTLSFGSNDPLS-SMRTAISLSPQSDIIQLEGEDMSSAKSLL 181
Query: 303 VQNSHNAIV 277
+QN+ +
Sbjct: 182 LQNTDEVYI 190
>Z79603-8|CAH04750.1| 137|Caenorhabditis elegans Hypothetical
protein M163.8 protein.
Length = 137
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/74 (24%), Positives = 29/74 (39%)
Frame = -1
Query: 653 VCLATNRQCIRFLKNGFCCHTTKWSLSKANL*RGDFRTWSCSIWTALS*PKRSKFKFEIR 474
+C+ N C ++ NGFC T S A + ++ SC + + S S
Sbjct: 20 MCMDVNPNCANWVSNGFC---TSSFYSDAQ--KTEYCPASCRLCSGASSTTSSSASSSSS 74
Query: 473 LCMTACRNCTKWVA 432
C + NC W +
Sbjct: 75 TCGDSNSNCASWAS 88
>EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c
protein.
Length = 765
Score = 28.7 bits (61), Expect = 5.7
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Frame = -3
Query: 471 VYDSLQELHEMGCVLVLWSYGSRDHVAHSMRDADLEGYFDIIISEGSTV-REERSDLVQN 295
++DSL E+H + C L+L S H + + + I G T RE L Q+
Sbjct: 418 IFDSLDEVHTLTCALLL--LNSDLHGPNMGKKMTARDFITNIAHTGCTFKREMLKTLFQS 475
Query: 294 -SHNAIVDYNLKKRFIENKFVFDIHNHRSDNNIPKSPKIVIKYLS 163
NAI N K N V + P V++Y S
Sbjct: 476 IKDNAISLQNSAKNSTANGSVASTSRRQPQQIYEVDPDSVVEYYS 520
>EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b
protein.
Length = 818
Score = 28.7 bits (61), Expect = 5.7
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Frame = -3
Query: 471 VYDSLQELHEMGCVLVLWSYGSRDHVAHSMRDADLEGYFDIIISEGSTV-REERSDLVQN 295
++DSL E+H + C L+L S H + + + I G T RE L Q+
Sbjct: 471 IFDSLDEVHTLTCALLL--LNSDLHGPNMGKKMTARDFITNIAHTGCTFKREMLKTLFQS 528
Query: 294 -SHNAIVDYNLKKRFIENKFVFDIHNHRSDNNIPKSPKIVIKYLS 163
NAI N K N V + P V++Y S
Sbjct: 529 IKDNAISLQNSAKNSTANGSVASTSRRQPQQIYEVDPDSVVEYYS 573
>AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical
protein Y55D9A.1c protein.
Length = 765
Score = 28.7 bits (61), Expect = 5.7
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Frame = -3
Query: 471 VYDSLQELHEMGCVLVLWSYGSRDHVAHSMRDADLEGYFDIIISEGSTV-REERSDLVQN 295
++DSL E+H + C L+L S H + + + I G T RE L Q+
Sbjct: 418 IFDSLDEVHTLTCALLL--LNSDLHGPNMGKKMTARDFITNIAHTGCTFKREMLKTLFQS 475
Query: 294 -SHNAIVDYNLKKRFIENKFVFDIHNHRSDNNIPKSPKIVIKYLS 163
NAI N K N V + P V++Y S
Sbjct: 476 IKDNAISLQNSAKNSTANGSVASTSRRQPQQIYEVDPDSVVEYYS 520
>AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical
protein Y55D9A.1b protein.
Length = 818
Score = 28.7 bits (61), Expect = 5.7
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Frame = -3
Query: 471 VYDSLQELHEMGCVLVLWSYGSRDHVAHSMRDADLEGYFDIIISEGSTV-REERSDLVQN 295
++DSL E+H + C L+L S H + + + I G T RE L Q+
Sbjct: 471 IFDSLDEVHTLTCALLL--LNSDLHGPNMGKKMTARDFITNIAHTGCTFKREMLKTLFQS 528
Query: 294 -SHNAIVDYNLKKRFIENKFVFDIHNHRSDNNIPKSPKIVIKYLS 163
NAI N K N V + P V++Y S
Sbjct: 529 IKDNAISLQNSAKNSTANGSVASTSRRQPQQIYEVDPDSVVEYYS 573
>AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical
protein Y55D9A.1a protein.
Length = 816
Score = 28.7 bits (61), Expect = 5.7
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Frame = -3
Query: 471 VYDSLQELHEMGCVLVLWSYGSRDHVAHSMRDADLEGYFDIIISEGSTV-REERSDLVQN 295
++DSL E+H + C L+L S H + + + I G T RE L Q+
Sbjct: 469 IFDSLDEVHTLTCALLL--LNSDLHGPNMGKKMTARDFITNIAHTGCTFKREMLKTLFQS 526
Query: 294 -SHNAIVDYNLKKRFIENKFVFDIHNHRSDNNIPKSPKIVIKYLS 163
NAI N K N V + P V++Y S
Sbjct: 527 IKDNAISLQNSAKNSTANGSVASTSRRQPQQIYEVDPDSVVEYYS 571
>AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical
protein Y105E8A.24b protein.
Length = 1127
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -3
Query: 381 RDADLEGYFDIIISEGSTVREERSDLVQNSHNA 283
RDADL YFD ++ + V E+ SDL ++S N+
Sbjct: 836 RDADLWSYFD-EKADAADVLEKSSDLSEDSDNS 867
>AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical
protein Y105E8A.24a protein.
Length = 1161
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -3
Query: 381 RDADLEGYFDIIISEGSTVREERSDLVQNSHNA 283
RDADL YFD ++ + V E+ SDL ++S N+
Sbjct: 836 RDADLWSYFD-EKADAADVLEKSSDLSEDSDNS 867
>AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine
receptor, class h protein37 protein.
Length = 345
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -3
Query: 681 FKTPV--LGHMCVLSNKPPMYSFLKEWFLLPH 592
F TP+ L H CVL+ P + LK W + H
Sbjct: 26 FVTPIYPLAHYCVLTKSPKSFGILK-WIIYVH 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,733,664
Number of Sequences: 27780
Number of extensions: 480374
Number of successful extensions: 1379
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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