Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c06
(838 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 192 2e-49
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 189 2e-48
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 1.1
11_01_0205 + 1617044-1617197,1617845-1618233 30 2.6
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.6
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878... 29 3.5
02_04_0073 - 19471254-19472681 29 4.6
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 29 6.1
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 192 bits (469), Expect = 2e-49
Identities = 97/210 (46%), Positives = 138/210 (65%), Gaps = 2/210 (0%)
Frame = -2
Query: 837 VVADKVQEINKTKQAVIFLRRXKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFN 658
V++D + I KT QA+ L++ A++D K S +R GKGKMRNRR I RKGPLI++
Sbjct: 157 VISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYG 216
Query: 657 KDQG-LTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPS 481
+ + +AFRN+PGV+ LAPGGHLGRFVIWT+SAF +L+ ++G+++ PS
Sbjct: 217 TEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPS 276
Query: 480 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 301
+KK F LP+PKMAN DL R++ SDE++ V++ NK V R ++ NPL N A+LKLNPY
Sbjct: 277 LKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPY 336
Query: 300 AAVLKRKAIL-ELRRRKNLKALADAEKSGL 214
++ A L E R K K D++++ L
Sbjct: 337 FGTARKMATLAEAARIKARKEKLDSKRTKL 366
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 189 bits (461), Expect = 2e-48
Identities = 99/223 (44%), Positives = 140/223 (62%), Gaps = 2/223 (0%)
Frame = -2
Query: 837 VVADKVQEINKTKQAVIFLRRXKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFN 658
VV+D ++ I KT Q++ L++ A++D K S +RAGKGKMRNRR I RKGPLI++
Sbjct: 156 VVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYG 215
Query: 657 KDQG-LTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPS 481
+ + +AFRN+PGV+ LAPGGHLGRFVIWT+ AF +LD ++G + TP+
Sbjct: 216 TEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPA 275
Query: 480 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 301
+KK F LP+PKMAN DL+RL+ SDE++ V++ NK V + NPL N A+LKLNPY
Sbjct: 276 LKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPY 335
Query: 300 AAVLKRKAIL-ELRRRKNLKALADAEKSGLKLSKRNPAMKAEK 175
++ A L E R K D++++ L + + A K
Sbjct: 336 FGTARKMAALAEAARVKARTEKLDSKRTKLSPEESSKIKAAGK 378
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -3
Query: 587 TS*SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQ--RWPTLTSHVFS 414
+S S+LR + LD+SSS +P S+ H HH+ + S WP S
Sbjct: 376 SSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLPEWPPRLQPEPS 435
Query: 413 SLMRSGRSSVLPTNA 369
++ SG LP +A
Sbjct: 436 PMLSSGLGLGLPYDA 450
>11_01_0205 + 1617044-1617197,1617845-1618233
Length = 180
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 307 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 396
++ HRLV G+ +F +H FV S ++L
Sbjct: 35 LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -2
Query: 573 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 433
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>09_02_0570 +
10786779-10787144,10787353-10787547,10787647-10787826,
10787925-10788119,10789629-10789727,10789822-10790328,
10790438-10790779
Length = 627
Score = 29.5 bits (63), Expect = 3.5
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Frame = -2
Query: 492 KTPSKQKKNFNLPQPKMANTDLTR---LLKSDEIRKVLRAPNKRVIRATR-KLNPLTNNK 325
K P+KQ K PQ +++ D +R + K + + L A + + + K P +
Sbjct: 409 KMPAKQAKEAPAPQAEVSPKDESRVKAIAKPSKAKSSLDADDDYEAESPKEKPKPKEVDV 468
Query: 324 AMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 157
A LK +++ L L R+K L A+ + + +K E++R RRR
Sbjct: 469 AKLKEIKRQEEMEKNR-LALERKKKLAEKQAAKAAARAQKEAEKKLKREEMRARRR 523
>02_04_0073 - 19471254-19472681
Length = 475
Score = 29.1 bits (62), Expect = 4.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 533 SPHSAGLTPYSGHGRHHRNKR 471
+P G +P S HG HHR+++
Sbjct: 20 APRPRGASPLSSHGHHHRSRK 40
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 508 GVKPAECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVA 630
G+ A G++ DD+ K SR L + ++N+ +GD A
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,826,034
Number of Sequences: 37544
Number of extensions: 409893
Number of successful extensions: 1107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -