Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c05
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 101 1e-21
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 87 1e-17
08_02_0742 - 20630313-20630798 36 0.055
02_01_0513 + 3715406-3715543,3716298-3716708,3716882-3717085,371... 30 2.1
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 30 2.7
05_04_0146 + 18393447-18394043 29 3.6
02_05_0713 + 31159574-31160764 29 6.3
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 29 6.3
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 28 8.4
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 28 8.4
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 101 bits (241), Expect = 1e-21
Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Frame = -1
Query: 746 DSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMS 576
D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E F++
Sbjct: 268 DLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT 327
Query: 575 CNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYD 396
N + G QR+D RK AF + + G + + G+W++RG E+ D D E Y+
Sbjct: 328 MNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDMELYE 386
Query: 395 WKKLDPSSEETKKLV 351
W K+D S E K+ V
Sbjct: 387 WTKVDISDEAQKERV 401
Score = 101 bits (241), Expect = 1e-21
Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Frame = -1
Query: 746 DSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMS 576
D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E F++
Sbjct: 833 DLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT 892
Query: 575 CNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYD 396
N + G QR+D RK AF + + G + + G+W++RG E+ D D E Y+
Sbjct: 893 MNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDMELYE 951
Query: 395 WKKLDPSSEETKKLV 351
W K+D S E K+ V
Sbjct: 952 WTKVDISDEAQKERV 966
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 87.4 bits (207), Expect = 1e-17
Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Frame = -1
Query: 746 DSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMS 576
D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E F++
Sbjct: 285 DLLPPSKMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT 344
Query: 575 CNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYD 396
N +R+D RK AF + + G + G+W++RG+++ D D E Y+
Sbjct: 345 MN------KRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIP-KFVMDEVYDMELYE 397
Query: 395 WKKLDPSSEETKK----LVQDYFSWNGTD 321
W K+D S E K+ +++D + G D
Sbjct: 398 WTKVDLSDEAQKERVNAMIEDQEPFEGED 426
>08_02_0742 - 20630313-20630798
Length = 161
Score = 35.5 bits (78), Expect = 0.055
Identities = 20/82 (24%), Positives = 33/82 (40%)
Frame = -2
Query: 514 PSACLVKTTIPPSLECGCGAERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSR 335
P ++++ PP C CG S + + T P++ ARR R +
Sbjct: 25 PDPPSLRSSTPPDPSCHCGPSAGSTAAEVPHAGYATPPSSSHGEEEAARRRRRGRGEEAD 84
Query: 334 GTEPTKTVESSTRARYSSECRP 269
G +P + V + + R CRP
Sbjct: 85 GVDPVRAVTTKRQRRGGRRCRP 106
>02_01_0513 +
3715406-3715543,3716298-3716708,3716882-3717085,
3717552-3717729,3717833-3717951
Length = 349
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 261 LDVGRHSLEYL-ALVELSTVFVGSVPREVVLDKFLGLLARRIQFLPVVGLVVHLPIRRQR 437
+D+ HS++ + + T+ ++PRE V D F+ L A + LP +V +RRQ
Sbjct: 114 IDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFICLTASSLAELPAGSVVGSASLRRQS 173
Query: 438 E 440
+
Sbjct: 174 Q 174
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 442 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 555
T +P T V + PN D CL IL N W+
Sbjct: 84 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 121
>05_04_0146 + 18393447-18394043
Length = 198
Score = 29.5 bits (63), Expect = 3.6
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -2
Query: 553 SRG*TKCANRLSHPSACLVKTTIPPSLECGCGAERSSCSRCRLIGRWTTSP---TTGRNW 383
+RG TK A + +A + + E GC A RS+CS L G TT+P TG W
Sbjct: 113 ARGRTKAAVAPAAAAAVVAAASAGGGREMGCRAGRSTCS---LHGTTTTTPRWRQTGGPW 169
Query: 382 ILRARR 365
R +
Sbjct: 170 RRRQNK 175
>02_05_0713 + 31159574-31160764
Length = 396
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = -1
Query: 512 VCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKKLDPSSEET 363
+C + + ++S +W W + P SD + S+ W K D + +++
Sbjct: 345 ICAKSKGESFSMSKIWQWSNVKGKLPAGSDNCSETASFPWMKRDATGDKS 394
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 454 ERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTRARYSSE 278
ER +C + WT S W+L+ R P LS S+ ++ ++ + S+E
Sbjct: 137 ERGERGKCSMWTLWTHSQLVVVGWLLKRRPPTKLSELESQLSQLQDELKKAKEQLLSTE 195
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 526 RLSHPSACLVKTTIPPSLECGCGAERSSCSRCRLI 422
R HP++ LV+ T PP G G S SR RL+
Sbjct: 30 RAGHPTSALVRATAPPPPATGGG---GSSSRARLL 61
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -2
Query: 520 SHPSACLVKTTIPPSLECGCGAERSSC 440
SH C+ K PP CGC +C
Sbjct: 206 SHAFVCVCKPAPPPPPPCGCSGGHGNC 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,946,943
Number of Sequences: 37544
Number of extensions: 508569
Number of successful extensions: 1381
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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